Commit 2805bd14 authored by Julien Y. Dutheil's avatar Julien Y. Dutheil
Browse files

New upstream version 2.4.1

parent 78ac75e2

CMakeLists.txt

+4 −4
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@@ -25,9 +25,9 @@ ENDIF(NOT CMAKE_BUILD_TYPE) 
#           library implements.

# In other words, the library implements all the interface numbers in the

# range from number current - age to current.

SET(${PROJECT_NAME}_VERSION_CURRENT "4")

SET(${PROJECT_NAME}_VERSION_CURRENT "5")

SET(${PROJECT_NAME}_VERSION_REVISION "0")

SET(${PROJECT_NAME}_VERSION_AGE "0")

SET(${PROJECT_NAME}_VERSION_AGE "1")



# Effective version number computation

MATH(EXPR ${PROJECT_NAME}_VERSION_MAJOR "${${PROJECT_NAME}_VERSION_CURRENT} - ${${PROJECT_NAME}_VERSION_AGE}")
@@ -77,10 +77,10 @@ ENDIF (DOXYGEN_FOUND) 
# Packager

SET(CPACK_PACKAGE_NAME "libbpp-core")

SET(CPACK_PACKAGE_VENDOR "Bio++ Development Team")

SET(CPACK_PACKAGE_VERSION "2.4.0")

SET(CPACK_PACKAGE_VERSION "2.4.1")

SET(CPACK_PACKAGE_VERSION_MAJOR "2")

SET(CPACK_PACKAGE_VERSION_MINOR "4")

SET(CPACK_PACKAGE_VERSION_PATCH "0")

SET(CPACK_PACKAGE_VERSION_PATCH "1")

SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "The Bio++ Core library")

SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_SOURCE_DIR}/COPYING.txt")

SET(CPACK_RESOURCE_FILE_AUTHORS "${CMAKE_SOURCE_DIR}/AUTHORS.txt")

ChangeLog

+4 −0
Original line number Diff line number Diff line 
06/06/18 Julien Dutheil

* Recursive param argument issue solved (closes #17).

* New version number: current 4 -> 5, age 0 -> 1 because of new symbol in AttributeTools. 



19/02/17 -*- Version 2.4.0 -*-



04/01/18 Laurent Guéguen

Doxyfile

+1 −1
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@@ -38,7 +38,7 @@ PROJECT_NAME = bpp-core 
# could be handy for archiving the generated documentation or if some version

# control system is used.



PROJECT_NUMBER         = 2.4.0

PROJECT_NUMBER         = 2.4.1



# Using the PROJECT_BRIEF tag one can provide an optional one line description

# for a project that appears at the top of each page and should give viewer a

bpp-core.spec

+3 −1
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@@ -3,7 +3,7 @@ 
URL: https://github.com/BioPP/bpp-core



Name: bpp-core

Version: 2.4.0

Version: 2.4.1

Release: 1%{?dist}

License: CECILL-2.0

Vendor: The Bio++ Project
@@ -71,6 +71,8 @@ rm -rf $RPM_BUILD_ROOT 
%{_prefix}/include/*



%changelog

* Fri Aug 10 2018 Julien Dutheil <julien.dutheil@univ-montp2.fr> 2.4.1-1

- Update for gcc8 + bug fixes

* Mon Mar 12 2018 Julien Dutheil <julien.dutheil@univ-montp2.fr> 2.4.0-1

- Increased interface number

- Removed dynamic exceptions specifications.

src/Bpp/App/ApplicationTools.h

+3 −1
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@@ -338,11 +338,12 @@ namespace bpp 
     *

     * @param parameterName    The name of the corresponding parameter.

     * @param params           The attribute map where options may be found.

     * @param separator        The character used to delimit values.

     * @param separator        The character used to delimit values (cannot be a space character).

     * @param defaultValue     The default value to use if the parameter is not found.

     * @param suffix           A suffix to be applied to the parameter name.

     * @param suffixIsOptional Tell if the suffix is absolutely required.

     * @param warn             Tell if a warning must be sent in case the parameter is not found.

     * @throw Exception If a space character is used as separator.

     * @return The corresponding value.

     */

    template<class T> static std::vector<T> getVectorParameter(
@@ -354,6 +355,7 @@ namespace bpp 
      bool suffixIsOptional = true,

      int warn = 0)

    {

      if (separator == ' ') throw Exception("ApplicationTools::getVectorParameter(). Separator cannot be a space character.");

      std::string s = getStringParameter(parameterName, params, defaultValue, suffix, suffixIsOptional, warn);

      if (TextTools::isEmpty(s)) return std::vector<T>(0);

      if (s[0] == '(' && s[s.size() - 1] == ')') {