debian/changelog

+libbpp-core (2.4.1-4) unstable; urgency=medium
+
+  * Rebuild for new version of gcc to fix symbols
+    Closes: #925731
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Trim trailing whitespace.
+  * Set upstream metadata fields: Contact, Name.
+
+ -- Andreas Tille <tille@debian.org>  Tue, 20 Aug 2019 15:52:50 +0200
+
 libbpp-core (2.4.1-3) unstable; urgency=medium
 
   * More sensible way to provide symbols amd64 only
@@ -188,4 +199,3 @@ libbpp-core (2.0.0) unstable; urgency=low
   * New source tree.
 
  -- Julien Dutheil <julien.dutheil@univ-montp2.fr>  Mon, 07 Feb 2011 09:00:00 +0100
-

debian/compat

-11

debian/control

@@ -4,10 +4,10 @@ Uploaders: Julien Dutheil <julien.dutheil@univ-montp2.fr>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                cmake,
                d-shlibs
-Standards-Version: 4.3.0
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-core
 Vcs-Git: https://salsa.debian.org/med-team/libbpp-core.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page

debian/libbpp-core4.symbols.amd64

@@ -12,8 +12,11 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp10ColorTools8gradientEjRKNS_8RGBColorES3_@Base 2.4.1
  _ZN3bpp10ColorTools8gradientEjRKNS_8RGBColorES3_S3_@Base 2.4.1
  _ZN3bpp10EigenValueIdE4hqr2Ev@Base 2.4.1
+ _ZN3bpp10EigenValueIdE4tql2Ev@Base 2.4.1
  _ZN3bpp10EigenValueIdE5tred2Ev@Base 2.4.1
  _ZN3bpp10EigenValueIdE6orthesEv@Base 2.4.1
+ _ZN3bpp10EigenValueIdEC1ERKNS_6MatrixIdEE@Base 2.4.1
+ _ZN3bpp10EigenValueIdEC2ERKNS_6MatrixIdEE@Base 2.4.1
  _ZN3bpp10EigenValueIdED1Ev@Base 2.4.1
  _ZN3bpp10EigenValueIdED2Ev@Base 2.4.1
  _ZN3bpp10Uniform01K4ZEROE@Base 2.4.1
@@ -98,11 +101,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp11Uniform01QDD0Ev@Base 2.4.1
  _ZN3bpp11Uniform01QDD1Ev@Base 2.4.1
  _ZN3bpp11VectorTools4testEv@Base 2.4.1
- _ZN3bpp11VectorTools5pasteIjEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIT_SaIS9_EERKS7_@Base 2.4.1
  _ZN3bpp11VectorTools6breaksERKSt6vectorIdSaIdEEj@Base 2.4.1
- _ZN3bpp11VectorTools6sumExpIdEET_RKSt6vectorIS2_SaIS2_EE@Base 2.4.1
- _ZN3bpp11VectorTools6sumExpIdEET_RKSt6vectorIS2_SaIS2_EES7_@Base 2.4.1
- _ZN3bpp11VectorTools8whichMaxIdEEmRKSt6vectorIT_SaIS3_EE@Base 2.4.1
  _ZN3bpp12BracketPointD0Ev@Base 2.4.1
  _ZN3bpp12BracketPointD1Ev@Base 2.4.1
  _ZN3bpp12BracketPointD2Ev@Base 2.4.1
@@ -275,8 +274,10 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp16ApplicationTools12displayErrorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
  _ZN3bpp16ApplicationTools12displayGaugeEmmcRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
  _ZN3bpp16ApplicationTools12getAFilePathERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS6_S6_St4lessIS6_ESaISt4pairIS7_S6_EEEbbS8_bS8_i@Base 2.4.1
+ _ZN3bpp16ApplicationTools12getParameterIjEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS8_S8_St4lessIS8_ESaISt4pairIS9_S8_EEES2_SA_bi@Base 2.4.1
  _ZN3bpp16ApplicationTools12getParameterIlEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS8_S8_St4lessIS8_ESaISt4pairIS9_S8_EEES2_SA_bi@Base 2.4.1
  _ZN3bpp16ApplicationTools12warningLevelE@Base 2.4.1
+ _ZN3bpp16ApplicationTools13displayResultINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvRKS7_RKT_@Base 2.4.1
  _ZN3bpp16ApplicationTools13terminalSplitE@Base 2.4.1
  _ZN3bpp16ApplicationTools13terminalWidthE@Base 2.4.1
  _ZN3bpp16ApplicationTools14displayMessageERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
@@ -326,6 +327,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp16PgfGraphicDeviceD0Ev@Base 2.4.1
  _ZN3bpp16PgfGraphicDeviceD1Ev@Base 2.4.1
  _ZN3bpp16SvgGraphicDevice10drawCircleEddds@Base 2.4.1
+ _ZN3bpp16SvgGraphicDevice11colorToTextB5cxx11ERKNS_8RGBColorE@Base 2.4.1
  _ZN3bpp16SvgGraphicDevice3endEv@Base 2.4.1
  _ZN3bpp16SvgGraphicDevice5beginEv@Base 2.4.1
  _ZN3bpp16SvgGraphicDevice7commentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
@@ -519,6 +521,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp19BfgsMultiDimensions6doInitERKNS_13ParameterListE@Base 2.4.1
  _ZN3bpp19BfgsMultiDimensions6doStepEv@Base 2.4.1
  _ZN3bpp19BfgsMultiDimensionsC1EPNS_19DerivableFirstOrderE@Base 2.4.1
+ _ZN3bpp19BfgsMultiDimensionsC1ERKS0_@Base 2.4.1
  _ZN3bpp19BfgsMultiDimensionsC2EPNS_19DerivableFirstOrderE@Base 2.4.1
  _ZN3bpp19BfgsMultiDimensionsD0Ev@Base 2.4.1
  _ZN3bpp19BfgsMultiDimensionsD1Ev@Base 2.4.1
@@ -547,6 +550,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp19LogsumHmmLikelihood22getHmmTransitionMatrixEv@Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihood27getHmmEmissionProbabilitiesEv@Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihoodC1EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesEbRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
+ _ZN3bpp19LogsumHmmLikelihoodC1ERKS0_@Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihoodC2EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesEbRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihoodD0Ev@Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihoodD1Ev@Base 2.4.1
@@ -670,6 +674,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp21RescaledHmmLikelihood22getHmmTransitionMatrixEv@Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihood27getHmmEmissionProbabilitiesEv@Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihoodC1EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
+ _ZN3bpp21RescaledHmmLikelihoodC1ERKS0_@Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihoodC2EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihoodD0Ev@Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihoodD1Ev@Base 2.4.1
@@ -1048,6 +1053,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp30LowMemoryRescaledHmmLikelihood22getHmmTransitionMatrixEv@Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihood27getHmmEmissionProbabilitiesEv@Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihoodC1EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm@Base 2.4.1
+ _ZN3bpp30LowMemoryRescaledHmmLikelihoodC1ERKS0_@Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihoodC2EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm@Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihoodD0Ev@Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihoodD1Ev@Base 2.4.1
@@ -1348,7 +1354,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp9TextTools7toUpperERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
  _ZN3bpp9TextTools8endsWithERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base 2.4.1
  _ZN3bpp9TextTools8toDoubleERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcc@Base 2.4.1
- _ZN3bpp9TextTools8toStringINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEES7_T_@Base 2.4.1
  _ZN3bpp9TextTools8toStringIcEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1
  _ZN3bpp9TextTools8toStringIdEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1
  _ZN3bpp9TextTools8toStringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1
@@ -1999,8 +2004,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNKSt5ctypeIcE8do_widenEc@Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8FunctionEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.4.1
- _ZNKSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE4findERS5_@Base 2.4.1
- _ZNKSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE4findERS3_@Base 2.4.1
  _ZNKSt8_Rb_treeIdSt4pairIKddESt10_Select1stIS2_EN3bpp28AbstractDiscreteDistribution5OrderESaIS2_EE4findERS1_@Base 2.4.1
  _ZNSt10shared_ptrIN3bpp12OutputStreamEED1Ev@Base 2.4.1
  _ZNSt10shared_ptrIN3bpp12OutputStreamEED2Ev@Base 2.4.1
@@ -2100,7 +2103,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNSt3mapIKN3bpp8RGBColorENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4lessIS2_ESaISt4pairIS2_S8_EEEixERS2_@Base 2.4.1
  _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN3bpp8RGBColorESt4lessIS5_ESaISt4pairIKS5_S7_EEEixEOS5_@Base 2.4.1
  _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_@Base 2.4.1
- _ZNSt3mapISt10shared_ptrIN3bpp8OperatorEEjSt4lessIS3_ESaISt4pairIKS3_jEEEixERS7_@Base 2.4.1
  _ZNSt3mapISt10shared_ptrIsEjSt4lessIS1_ESaISt4pairIKS1_jEEEixERS5_@Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseESt15_Deque_iteratorIS5_RS5_PS5_E@Base 2.4.1
@@ -2127,7 +2129,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJN9__gnu_cxx17__normal_iteratorIPKcS5_EESD_EEEvNSA_IPS5_S7_EEDpOT_@Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE7reserveEm@Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1
@@ -2164,8 +2165,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNSt6vectorISt10shared_ptrIN3bpp8OperatorEESaIS3_EED2Ev@Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE17_M_default_appendEm@Base 2.4.1
- _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 2.4.1
- _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS3_S5_EE@Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EED1Ev@Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EED2Ev@Base 2.4.1
@@ -2231,11 +2230,9 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EEaSERKS8_@Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE24_M_get_insert_unique_posERS5_@Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS6_ERS5_@Base 2.4.1
- _ZNSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE4findERS5_@Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE8_M_eraseEPSt13_Rb_tree_nodeIS6_E@Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE24_M_get_insert_unique_posERS3_@Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS4_ERS3_@Base 2.4.1
- _ZNSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE4findERS3_@Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE8_M_eraseEPSt13_Rb_tree_nodeIS4_E@Base 2.4.1
  _ZNSt8_Rb_treeISt4pairIjjES1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE16_M_insert_uniqueIS1_EES0_ISt17_Rb_tree_iteratorIS1_EbEOT_@Base 2.4.1
  _ZNSt8_Rb_treeISt4pairIjjES1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE4findERKS1_@Base 2.4.1

debian/upstream/metadata

+Name: Bpp-Core
+Contact: Julien Yann Dutheil <julien.dutheil@univ-montp2.fr>