Commit 7506d6dd authored by Julien Y. Dutheil's avatar Julien Y. Dutheil
Browse files

New upstream version 2.4.1

parent afa6b0ca

CMakeLists.txt

+2 −2
Original line number Diff line number Diff line
@@ -104,10 +104,10 @@ ENDIF(NO_DEP_CHECK) 
# Packager

SET(CPACK_PACKAGE_NAME "libbpp-raa")

SET(CPACK_PACKAGE_VENDOR "Bio++ Development Team")

SET(CPACK_PACKAGE_VERSION "2.4.0")

SET(CPACK_PACKAGE_VERSION "2.4.1")

SET(CPACK_PACKAGE_VERSION_MAJOR "2")

SET(CPACK_PACKAGE_VERSION_MINOR "4")

SET(CPACK_PACKAGE_VERSION_PATCH "0")

SET(CPACK_PACKAGE_VERSION_PATCH "1")

SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "The Bio++ Remote Acnuc Access library")

SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_SOURCE_DIR}/COPYING.txt")

SET(CPACK_RESOURCE_FILE_AUTHORS "${CMAKE_SOURCE_DIR}/AUTHORS.txt")

Doxyfile

+1 −1
Original line number Diff line number Diff line
@@ -38,7 +38,7 @@ PROJECT_NAME = bpp-raa 
# could be handy for archiving the generated documentation or if some version

# control system is used.



PROJECT_NUMBER         = 2.4.0

PROJECT_NUMBER         = 2.4.1



# Using the PROJECT_BRIEF tag one can provide an optional one line description

# for a project that appears at the top of each page and should give viewer a

bpp-raa.spec

+4 −2
Original line number Diff line number Diff line
@@ -3,7 +3,7 @@ 
URL: https://github.com/BioPP/bpp-raa



Name: bpp-raa

Version: 2.4.0

Version: 2.4.1

Release: 1%{?dist}

License: CECILL-2.0

Vendor: The Bio++ Project
@@ -90,8 +90,10 @@ rm -rf $RPM_BUILD_ROOT 
%{_prefix}/include/*



%changelog

* Mon Aug 13 2018 Julien Dutheil <julien.dutheil@univ-montp2.fr> 2.4.1-1

- Compatibility gcc8.

* Mon Feb 26 2018 Julien Dutheil <julien.dutheil@univ-montp2.fr> 2.4.0-1

- Increased interface number

- Increased interface number.

- Removed dynamic exceptions specifications.

* Tue Jun 06 2017 Julien Dutheil <julien.dutheil@univ-montp2.fr> 2.3.1-1

- Increased interface number

header.html

deleted100644 → 0
+0 −27
Original line number Diff line number Diff line 
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">

  <head>

    <meta http-equiv="Content-Type" content="text/xhtml;charset=utf-8" />

    <meta http-equiv="Content-Style-Type" content="text/css" />

    <meta http-equiv="Content-Language" content="en" />

		<link href="doxygen.css" rel="stylesheet" type="text/css">

    <link href="tabs.css" rel="stylesheet" type="text/css">

	</head>



	<body>

		<div id="banner">	

      <h1><a href="http://kimura.univ-montp2.fr/BioPP/" accesskey="1" target="_top">Bio++</a> Class documentation</h1>

    </div>



    <div class="tabs">

      <ul>

        <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Utils/html/index.html" target="_top"><span>Utils</span></a></li>

        <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/NumCalc/html/index.html" target="_top"><span>NumCalc</span></a></li>

        <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Seq/html/index.html" target="_top"><span>SeqLib</span></a></li>

        <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Phyl/html/index.html" target="_top"><span>PhylLib</span></a></li>

        <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Pop/html/index.html" target="_top"><span>PopGenLib</span></a></li>

        <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Raa/html/index.html" target="_top"><span>Raa</span></a></li>

      </ul>

    </div>



		<br />

src/Bpp/Raa/RAA.cpp

+2 −9
Original line number Diff line number Diff line
@@ -262,7 +262,7 @@ Sequence* RAA::translateCDS(int seqrank) 
  {

    Sprot = new BasicSequence(*sname, *pstring, &AlphabetTools::PROTEIN_ALPHABET );

  }

  catch (BadCharException e)

  catch (BadCharException& e)

  {

    delete sname;

    delete pstring;
@@ -283,14 +283,7 @@ Sequence* RAA::translateCDS(const string& name) 
  if (rank == 0)

    return NULL;

  Sequence* Sprot;

  try

  {

  Sprot = translateCDS(rank);

  }

  catch (BadCharException e)

  {

    throw e;

  }

  return Sprot;

}