Commit 690616d6 authored by Julien Y. Dutheil's avatar Julien Y. Dutheil
Browse files

New upstream version 2.4.0

parent 0dc6a7ed

.clang-format

0 → 100644
+8 −0
Original line number Diff line number Diff line 
BasedOnStyle: Mozilla

Cpp11BracedListStyle: true

BreakBeforeBraces: Allman

NamespaceIndentation: All

AlwaysBreakAfterReturnType: None

AlwaysBreakAfterDefinitionReturnType: None

CommentPragmas: ^\*

ColumnLimit: 120

.gitignore

0 → 100644
+1 −0
Original line number Diff line number Diff line 
.clang_complete

CMakeLists.txt

+7 −5
Original line number Diff line number Diff line
@@ -35,7 +35,7 @@ ELSE(NO_DEP_CHECK) 
#           library implements.

# In other words, the library implements all the interface numbers in the

# range from number current - age to current.

SET(${PROJECT_NAME}_VERSION_CURRENT "11")

SET(${PROJECT_NAME}_VERSION_CURRENT "12")

SET(${PROJECT_NAME}_VERSION_REVISION "0")

SET(${PROJECT_NAME}_VERSION_AGE "0")
@@ -53,7 +53,7 @@ if (CMAKE_INSTALL_PREFIX) 
endif (CMAKE_INSTALL_PREFIX)



include (GNUInstallDirs)

find_package (bpp-core 3.0.0 REQUIRED)

find_package (bpp-core 4.0.0 REQUIRED)



# CMake package

set (cmake-package-location ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})
@@ -95,10 +95,10 @@ ENDIF(NO_DEP_CHECK) 
# Packager

SET(CPACK_PACKAGE_NAME "libbpp-seq")

SET(CPACK_PACKAGE_VENDOR "Bio++ Development Team")

SET(CPACK_PACKAGE_VERSION "2.3.1")

SET(CPACK_PACKAGE_VERSION "2.4.0")

SET(CPACK_PACKAGE_VERSION_MAJOR "2")

SET(CPACK_PACKAGE_VERSION_MINOR "3")

SET(CPACK_PACKAGE_VERSION_PATCH "1")

SET(CPACK_PACKAGE_VERSION_MINOR "4")

SET(CPACK_PACKAGE_VERSION_PATCH "0")

SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "The Bio++ Sequence library")

SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_SOURCE_DIR}/COPYING.txt")

SET(CPACK_RESOURCE_FILE_AUTHORS "${CMAKE_SOURCE_DIR}/AUTHORS.txt")
@@ -107,6 +107,8 @@ SET(CPACK_SOURCE_GENERATOR "TGZ") 
# /!\ This assumes that an external build is used

SET(CPACK_SOURCE_IGNORE_FILES 

       "/build/" 

       "/html/" 

       "/BppSeq.tag/" 

       "/\\\\.git/" 

       "/\\\\.gitignore" 

       ${CPACK_SOURCE_IGNORE_FILES}

ChangeLog

+13 −0
Original line number Diff line number Diff line 
19/02/18 -*- Version 2.4.0 -*-



19/02/18 Julien Dutheil

* Increased interface number (new 12)



10/12/17 -*- Version 2.3.2 -*-



08/11/17 Laurent Guéguen

* More efficient codon models.



27/06/17 François Grindaud

* Removed all dynamic exceptions specification



10/05/17 -*- Version 2.3.0 -*-



18/12/16 Julien Dutheil

Doxyfile

+1 −1
Original line number Diff line number Diff line
@@ -38,7 +38,7 @@ PROJECT_NAME = bpp-seq 
# could be handy for archiving the generated documentation or if some version

# control system is used.



PROJECT_NUMBER         = 2.3.0

PROJECT_NUMBER         = 2.4.0



# Using the PROJECT_BRIEF tag one can provide an optional one line description

# for a project that appears at the top of each page and should give viewer a