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Commits on Source (7)
debhelper 11
· c29b2b7c
Andreas Tille
authored
Sep 27, 2018
c29b2b7c
Point Vcs fields to salsa.debian.org
· 68971f86
Andreas Tille
authored
Sep 27, 2018
68971f86
Standards-Version: 4.2.1
· 1259f2f1
Andreas Tille
authored
Sep 27, 2018
1259f2f1
Fix perl interpreter path
· 887ff247
Andreas Tille
authored
Sep 27, 2018
887ff247
Do not parse d/changelog
· a6aab66c
Andreas Tille
authored
Sep 27, 2018
a6aab66c
Fix permissions, Do not include installation docs
· 6e8424cc
Andreas Tille
authored
Sep 27, 2018
6e8424cc
Upload to unstable
· 25205888
Andreas Tille
authored
Sep 27, 2018
25205888
Show whitespace changes
Inline
Side-by-side
debian/changelog
View file @
25205888
libchado-perl (1.31-5) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Fix perl interpreter path
* Do not parse d/changelog
* Fix permissions
* Do not include installation docs
-- Andreas Tille <tille@debian.org> Thu, 27 Sep 2018 20:49:54 +0200
libchado-perl (1.31-4) unstable; urgency=medium
* Move packaging from SVN to Git
...
...
debian/compat
View file @
25205888
1
0
1
1
debian/control
View file @
25205888
...
...
@@ -6,7 +6,7 @@ Uploaders: Scott Cain <scain@cpan.org>,
Andreas Tille <tille@debian.org>
Section: perl
Priority: optional
Build-Depends: debhelper (>= 1
0
)
Build-Depends: debhelper (>= 1
1~
)
Build-Depends-Indep: perl,
libclass-dbi-pg-perl,
libxml-libxslt-perl,
...
...
@@ -29,9 +29,9 @@ Build-Depends-Indep: perl,
libsql-translator-perl,
libdbix-dbstag-perl,
libmodule-build-perl
Standards-Version: 4.
1.0
Vcs-Browser: https://
anonscm
.debian.org/
cgit/debian-med
/libchado-perl
.git
Vcs-Git: https://
anonscm
.debian.org/
git/debian-med
/libchado-perl.git
Standards-Version: 4.
2.1
Vcs-Browser: https://
salsa
.debian.org/
med-team
/libchado-perl
Vcs-Git: https://
salsa
.debian.org/
med-team
/libchado-perl.git
Homepage: http://gmod.org/wiki/Chado
Package: libchado-perl
...
...
debian/rules
View file @
25205888
#!/usr/bin/make -f
pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
include /usr/share/dpkg/default.mk
#export GMOD_ROOT=/usr/share/gmod/chado
export GMOD_ROOT=$(CURDIR)/debian/$(
pkg
)/usr/share/gmod/chado
export CHAOS_HOME=$(CURDIR)/debian/$(
pkg
)/usr/share/gmod/chaos
export GMOD_ROOT=$(CURDIR)/debian/$(
DEB_SOURCE
)/usr/share/gmod/chado
export CHAOS_HOME=$(CURDIR)/debian/$(
DEB_SOURCE
)/usr/share/gmod/chaos
export CHADO_DB_NAME=gmod-chado
export PREFIX=/usr
...
...
@@ -12,47 +12,61 @@ export PREFIX=/usr
dh $@ --buildsystem=perl_makemaker
override_dh_auto_configure:
perl Makefile.PL INSTALL_BASE=/usr DBNAME=$(CHADO_DB_NAME) DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 GMOD_ROOT=$(GMOD_ROOT) DBDRIVER=PostgreSQL RECONFIGURE=1 SIMPLE=Y LOCAL_TMP=$(CURDIR)/debian/$(
pkg
)/tmp
perl Makefile.PL INSTALL_BASE=/usr DBNAME=$(CHADO_DB_NAME) DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 GMOD_ROOT=$(GMOD_ROOT) DBDRIVER=PostgreSQL RECONFIGURE=1 SIMPLE=Y LOCAL_TMP=$(CURDIR)/debian/$(
DEB_SOURCE
)/tmp
override_dh_install:
dh_install -O--buildsystem=perl_makemaker
rm -f debian/$(
pkg
)/usr/share/gmod/chado/load/etc/load.conf
sed -i 's/SQLFILE=\/.*\/$(
pkg
)/SQLFILE=/' debian/$(
pkg
)/usr/share/gmod/chado/conf/gmod-chado.conf
sed -i 's/TMP=\/.*\/tmp/CONF=\/tmp/' debian/$(
pkg
)/usr/share/gmod/chado/conf/gmod.conf
sed -i 's/CONF=.*\/conf/CONF=\/etc\/gmod/' debian/$(
pkg
)/usr/share/gmod/chado/conf/gmod.conf
mv $(GMOD_ROOT)/conf/* debian/$(
pkg
)/etc/gmod/
rm -f debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/load/etc/load.conf
sed -i 's/SQLFILE=\/.*\/$(
DEB_SOURCE
)/SQLFILE=/' debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/conf/gmod-chado.conf
sed -i 's/TMP=\/.*\/tmp/CONF=\/tmp/' debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/conf/gmod.conf
sed -i 's/CONF=.*\/conf/CONF=\/etc\/gmod/' debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/conf/gmod.conf
mv $(GMOD_ROOT)/conf/* debian/$(
DEB_SOURCE
)/etc/gmod/
# Give exexution rights to perl scripts
find debian/$(
pkg
)/ -name *.pl | xargs chmod 755
find debian/$(
pkg
)/ -name *.tmpl | xargs chmod 644
find debian/$(
pkg
)/ -name *.pm | xargs chmod 644
find debian/$(
pkg
)/ -name *.pod | xargs rm -f
find debian/$(
pkg
)/ -name .packlist | xargs rm -f
find debian/$(
pkg
)/ -name "*.sql" | xargs chmod a-x
chmod 755 debian/$(
pkg
)/usr/share/gmod/chado/soi/t/t_soi_parse_intersect
chmod 755 debian/$(
pkg
)/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl
mv debian/tmp/usr/bin/test* debian/$(
pkg
)/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/gmod_chado* debian/$(
pkg
)/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/config* debian/$(
pkg
)/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/Auto* debian/$(
pkg
)/usr/share/gmod/chado/bin/
find debian/$(
DEB_SOURCE
)/ -name *.pl | xargs chmod 755
find debian/$(
DEB_SOURCE
)/ -name *.tmpl | xargs chmod 644
find debian/$(
DEB_SOURCE
)/ -name *.pm | xargs chmod 644
find debian/$(
DEB_SOURCE
)/ -name *.pod | xargs rm -f
find debian/$(
DEB_SOURCE
)/ -name .packlist | xargs rm -f
find debian/$(
DEB_SOURCE
)/ -name "*.sql" | xargs chmod a-x
chmod 755 debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/soi/t/t_soi_parse_intersect
chmod 755 debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl
mv debian/tmp/usr/bin/test* debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/gmod_chado* debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/config* debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/Auto* debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/bin/
mv debian/tmp/usr/bin/* debian/chado-utils/usr/share/gmod/chado/bin/
mv debian/tmp/usr/lib/perl5/* debian/$(
pkg
)/usr/share/perl5/
rm -rf debian/$(
pkg
)/usr/lib/perl5
mv debian/tmp/usr/man/man3 debian/$(
pkg
)/usr/share/man
mv debian/tmp/usr/lib/perl5/* debian/$(
DEB_SOURCE
)/usr/share/perl5/
rm -rf debian/$(
DEB_SOURCE
)/usr/lib/perl5
mv debian/tmp/usr/man/man3 debian/$(
DEB_SOURCE
)/usr/share/man
mv debian/tmp/usr/man/man1 debian/chado-utils/usr/share/man
cp debian/testdb.pl debian/$(
pkg
)/usr/share/gmod/chado/bin/
rm -rf debian/$(
pkg
)/usr/share/perl5/x86_64-linux-gnu-thread-multi
cp debian/testdb.pl debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/bin/
rm -rf debian/$(
DEB_SOURCE
)/usr/share/perl5/x86_64-linux-gnu-thread-multi
# Needed for runtime configure
rm -rf debian/$(
pkg
)/usr/share/gmod/chado/lib
rm -rf debian/$(
pkg
)/usr/bin
rm -rf debian/$(
pkg
)/usr/lib
rm -rf debian/$(
pkg
)/usr/share/gmod/chado/load/logs
rm -rf debian/$(
pkg
)/usr/share/gmod/chado/tmp
rm -rf debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/lib
rm -rf debian/$(
DEB_SOURCE
)/usr/bin
rm -rf debian/$(
DEB_SOURCE
)/usr/lib
rm -rf debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/load/logs
rm -rf debian/$(
DEB_SOURCE
)/usr/share/gmod/chado/tmp
# Remove not required man pages for user (also contains pod2man errors and missing what-is)
rm -rf debian/$(pkg)/usr/share/man
rm -rf debian/$(DEB_SOURCE)/usr/share/man
# Fix perl interpreter path
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
done
override_dh_installdocs:
dh_installdocs
# remove installation doc
find debian -name "INSTALL.Chado*" -delete
override_dh_auto_test:
echo "Skipping tests to avoid db access"
override_dh_fixperms:
dh_fixperms
chmod 644 debian/$(pkg)/etc/gmod/gmod-chado.conf
chmod 644 debian/$(DEB_SOURCE)/etc/gmod/gmod-chado.conf
find debian -name create_so_bridge_command -exec chmod 644 \{\} \;
find debian -name Skip_tables.pm -exec chmod 644 \{\} \;
find debian -name "*.tt2" -exec chmod 644 \{\} \;
find debian -name "*.tmpl" -exec chmod 644 \{\} \;
\ No newline at end of file
Andreas Tille authored
Andreas Tille authored
Andreas Tille authored
Andreas Tille authored
Andreas Tille authored
Andreas Tille authored
Andreas Tille authored