debian/README.test

+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.

debian/changelog

+libedlib (1.2.3-2) unstable; urgency=medium
+
+  * Fix symbols file
+    Closes: #905386
+  * Standards-Version: 4.2.1
+  * Run build time tests
+  * Add autopkgtest
+
+ -- Andreas Tille <tille@debian.org>  Fri, 19 Oct 2018 08:15:14 +0200
+
 libedlib (1.2.3-1) unstable; urgency=medium
 
   * Initial release (Closes: #901184)

debian/control

@@ -7,7 +7,7 @@ Build-Depends: debhelper (>= 11~),
                cmake,
                d-shlibs,
                rename
-Standards-Version: 4.1.4
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/libedlib-dev
 Vcs-Git: https://salsa.debian.org/med-team/libedlib-dev.git
 Homepage: https://github.com/Martinsos/edlib

debian/edlib-aligner.docs

+debian/tests/run-unit-test

debian/edlib-aligner.examples

+apps/aligner/test_data

debian/libedlib0.symbols

@@ -2,7 +2,7 @@ libedlib.so.0 libedlib0 #MINVER#
  _ZN18EqualityDefinitionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPK17EdlibEqualityPairi@Base 1.2.3
  _ZN18EqualityDefinitionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPK17EdlibEqualityPairi@Base 1.2.3
  _ZNSt6vectorIcSaIcEE12emplace_backIJcEEEvDpOT_@Base 1.2.3
- _ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 1.2.3
+ _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.3
  edlibAlign@Base 1.2.3
  edlibAlignmentToCigar@Base 1.2.3
  edlibDefaultAlignConfig@Base 1.2.3

debian/rules

@@ -21,3 +21,9 @@ override_dh_install:
 		    --exclude-la \
 		    --movedev debian/tmp/usr/include/* usr/include \
 		    debian/tmp/usr/lib/*.so
+
+override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	`find . -name edlib-aligner` -p apps/aligner/test_data/query.fasta apps/aligner/test_data/target.fasta
+	`find . -name runTests`
+endif

debian/tests/control

+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr

debian/tests/run-unit-test

+#!/bin/bash
+set -e
+
+pkg=edlib-aligner
+
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
+
+cd $AUTOPKGTEST_TMP
+
+edlib-aligner -p test_data/query.fasta test_data/target.fasta