debian/changelog

-libgenome (1.3.11+svn20110227.4616-1) UNRELEASED; urgency=medium
+libgenome (1.3.11+svn20110227.4616-1) unstable; urgency=medium
 
   * New upstream SVN checkout
   * Rewrote get-orig-source to fetch source tarball from SVN
   * Drop version number from package name
+  * Add symbols file
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.1.5
 
- -- Andreas Tille <tille@debian.org>  Wed, 11 Jul 2018 15:35:15 +0200
+ -- Andreas Tille <tille@debian.org>  Wed, 18 Jul 2018 13:06:48 +0200
 
 libgenome (1.3.1-10) unstable; urgency=medium
 

debian/compat

-10
+11

debian/control

@@ -3,17 +3,17 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                d-shlibs (>= 0.61)
-Standards-Version: 4.1.1
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libgenome.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/libgenome.git
+Standards-Version: 4.1.5
+Vcs-Browser: https://salsa.debian.org/med-team/libgenome
+Vcs-Git: https://salsa.debian.org/med-team/libgenome.git
 Homepage: https://sourceforge.net/projects/libgenome/
 
 Package: libgenome-dev
 Architecture: any
 Section: libdevel
-Depends: libgenome1 (= ${binary:Version}),
+Depends: libgenome0 (= ${binary:Version}),
          ${misc:Depends},
          ${devlibs:Depends}
 Conflicts: libgenome-1.3-dev
@@ -34,13 +34,16 @@ Description: toolkit for developing bioinformatic related software (devel)
  This is the development package containing the statically linked
  library and the header files.
 
-Package: libgenome1
+Package: libgenome0
 Architecture: any
 Multi-Arch: same
 Section: libs
 Depends: ${shlibs:Depends},
          ${misc:Depends}
 Pre-Depends: ${misc:Pre-Depends}
+Conflicts: libgenome-1.3-0v5
+Provides: libgenome-1.3-0v5
+Replaces: libgenome-1.3-0v5
 Description: toolkit for developing bioinformatic related software
  libGenome is a freely available toolkit for developing bioinformatic related
  software in C++.  It is intended to take the hassle out of performing common

debian/patches/drop-version-number.patch

@@ -9,7 +9,12 @@ Description: Drop version number from library file name
 
 --- a/libGenome/Makefile.am
 +++ b/libGenome/Makefile.am
-@@ -35,9 +35,9 @@ library_includedir=$(includedir)/$(GENER
+@@ -31,13 +31,13 @@ gnRAWSource.cpp gnBaseFeature.cpp gnSEQS
+ gnContigSpec.cpp gnSourceHeader.cpp gnException.cpp \
+ gnFastTranslator.cpp gnPosSpecificTranslator.cpp gnDefs.cpp
+ 
+-library_includedir=$(includedir)/$(GENERIC_LIBRARY_NAME)-$(GENERIC_API_VERSION)/$(GENERIC_LIBRARY_NAME)
++library_includedir=$(includedir)/$(GENERIC_LIBRARY_NAME)
  
  library_include_HEADERS = $(LIBGENOME_H)
  
@@ -22,3 +27,52 @@ Description: Drop version number from library file name
  
  
  
+--- /dev/null
++++ b/libGenome.pc.in
+@@ -0,0 +1,12 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: libGenome
++Description: c++ library supporting sequence I/O and manipulation 
++Version: @VERSION@
++Requires: 
++Libs: @OPENMP_CXXFLAGS@ -L${libdir} -lGenome
++Cflags: @OPENMP_CXXFLAGS@ -I${includedir}/@GENERIC_LIBRARY_NAME@
++
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -9,7 +9,7 @@ projects/libGenome.nsi \
+ projects/libGenome.doxygen
+ 
+ pkgconfigdir = $(libdir)/pkgconfig
+-pkgconfig_DATA = libGenome-@GENERIC_API_VERSION@.pc
++pkgconfig_DATA = libGenome.pc
+ 
+ SUBDIRS = libGenome   
+ 
+--- a/libGenome-1.3.pc.in
++++ /dev/null
+@@ -1,12 +0,0 @@
+-prefix=@prefix@
+-exec_prefix=@exec_prefix@
+-libdir=@libdir@
+-includedir=@includedir@
+-
+-Name: libGenome
+-Description: c++ library supporting sequence I/O and manipulation 
+-Version: @VERSION@
+-Requires: 
+-Libs: @OPENMP_CXXFLAGS@ -L${libdir} -lGenome-@GENERIC_API_VERSION@
+-Cflags: @OPENMP_CXXFLAGS@ -I${includedir}/@GENERIC_LIBRARY_NAME@-@GENERIC_API_VERSION@ 
+-
+--- a/configure.ac
++++ b/configure.ac
+@@ -121,4 +121,4 @@ AC_PROG_GCC_TRADITIONAL
+ dnl SAVE_LIBRARY_VERSION
+ AC_SUBST(LIBTOOL_VERSION_INFO)
+ 
+-AC_OUTPUT(Makefile libGenome/Makefile libGenome-1.3.pc )
++AC_OUTPUT(Makefile libGenome/Makefile libGenome.pc )

debian/patches/series

 gcc-6.1.patch
+drop-version-number.patch

debian/rules

@@ -10,7 +10,6 @@ override_dh_install:
 	# Call d-shlibmove to comply with library packaging guide
 	# mv debian/tmp/usr/include/*/* debian/tmp/usr/include/
 	d-shlibmove --commit \
-	            --v5 \
 	            --multiarch \
 		    --devunversioned \
 		    --exclude-la \