Commit 38a2d411 authored by Gert Wollny's avatar Gert Wollny
Browse files

New upstream version 2.4.03

parent a0db46f3

.travis.yml

0 → 100644
+24 −0
Original line number Diff line number Diff line 
sudo: false

language: c

os: 

    - linux

    - osx



compiler:

  - gcc



before_install: ./brew/brew_install.sh

   

addons:

  apt:

    packages:

      - libnetcdf-dev

      - libhdf5-serial-dev



script: 

        - cmake -DCMAKE_BUILD_TYPE:STRING=Release -DLIBMINC_MINC1_SUPPORT:BOOL=OFF -DBUILD_TESTING:BOOL=ON

        - make

        - make test

        - cmake -DCMAKE_BUILD_TYPE:STRING=Release -DLIBMINC_MINC1_SUPPORT:BOOL=ON -DBUILD_TESTING:BOOL=ON

        - make

        - make test

CMakeLists.txt

+127 −41
Original line number Diff line number Diff line
@@ -6,10 +6,10 @@ 
PROJECT(LIBMINC)



SET(LIBMINC_PACKAGE_VERSION_MAJOR 2)

SET(LIBMINC_PACKAGE_VERSION_MINOR 3)

SET(LIBMINC_PACKAGE_VERSION_PATCH 00)

SET(LIBMINC_PACKAGE_VERSION_MINOR 4)

SET(LIBMINC_PACKAGE_VERSION_PATCH 03)



SET(LIBMINC_SOVERSION "4.0.0")

SET(LIBMINC_SOVERSION "5.2.0")



SET(LIBMINC_PACKAGE "libminc")

SET(LIBMINC_PACKAGE_BUGREPORT "a.janke@gmail.com")
@@ -22,7 +22,11 @@ INCLUDE(CTest) 


ENABLE_TESTING()



CMAKE_MINIMUM_REQUIRED(VERSION 2.6)

CMAKE_MINIMUM_REQUIRED(VERSION 2.8)



IF( POLICY CMP0063 )

  CMAKE_POLICY(SET CMP0063 NEW)

ENDIF()



IF(MINC_TOOLKIT_BUILD)

  SET(LIBMINC_EXTERNALLY_CONFIGURED ON)
@@ -46,6 +50,7 @@ IF(NOT LIBMINC_EXTERNALLY_CONFIGURED) 


  OPTION(LIBMINC_MINC1_SUPPORT           "Support minc1 file format, requires NETCDF" OFF)

  OPTION(LIBMINC_BUILD_EZMINC_EXAMPLES   "Build EZminc examples" OFF)

  OPTION(LIBMINC_USE_SYSTEM_NIFTI        "Use system NIfTI-1 library" OFF)



  SET (LIBMINC_EXPORTED_TARGETS "LIBMINC-targets")

  SET (LIBMINC_INSTALL_BIN_DIR bin)
@@ -59,12 +64,26 @@ IF(NOT LIBMINC_EXTERNALLY_CONFIGURED) 


  # external packages

  FIND_PACKAGE(ZLIB REQUIRED)

  FIND_PACKAGE(HDF5 REQUIRED)

  SET(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON)

  FIND_PACKAGE(HDF5 REQUIRED COMPONENTS C )

  

  IF (LIBMINC_USE_SYSTEM_NIFTI)

    FIND_PACKAGE(NIFTI)

  ELSE(LIBMINC_USE_SYSTEM_NIFTI)

    INCLUDE(ExternalProject)

    INCLUDE(BuildNIFTI)

    build_nifti(${CMAKE_INSTALL_PREFIX} ${CMAKE_BINARY_DIR}/external)

  ENDIF(LIBMINC_USE_SYSTEM_NIFTI)

  

  SET(HAVE_ZLIB ON)

ELSE(NOT LIBMINC_EXTERNALLY_CONFIGURED)

  #TODO: set paths for HDF5 etc

ENDIF(NOT LIBMINC_EXTERNALLY_CONFIGURED)



IF(NOT DEFINED CMAKE_MACOSX_RPATH)

  set(CMAKE_MACOSX_RPATH ON)

ENDIF(NOT DEFINED CMAKE_MACOSX_RPATH)



# Configure libminc

IF(LIBMINC_BUILD_SHARED_LIBS)

  SET(LIBRARY_TYPE SHARED)
@@ -86,6 +105,8 @@ ENDIF(UNIX) 


# check for prereqs

INCLUDE(CheckFunctionExists)

INCLUDE(CheckSymbolExists)

INCLUDE(CheckLibraryExists)



CHECK_FUNCTION_EXISTS(mkstemp  HAVE_MKSTEMP)

CHECK_FUNCTION_EXISTS(tmpnam   HAVE_TMPNAM)
@@ -102,17 +123,32 @@ CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR) 
CHECK_FUNCTION_EXISTS(sysconf  HAVE_SYSCONF)

CHECK_FUNCTION_EXISTS(system   HAVE_SYSTEM)



if(NOT MSVC)

  set(CMAKE_REQUIRED_LIBRARIES m)

endif()



set(CMAKE_REQUIRED_DEFINITIONS -D_GNU_SOURCE=1 )



CHECK_SYMBOL_EXISTS(rint     "math.h"  HAVE_RINT)

CHECK_SYMBOL_EXISTS(copysign "math.h" HAVE_COPYSIGN)

CHECK_SYMBOL_EXISTS(round    "math.h" HAVE_ROUND)

unset(CMAKE_REQUIRED_LIBRARIES)

unset(CMAKE_REQUIRED_DEFINITIONS)





CHECK_FUNCTION_EXISTS(srand48   HAVE_SRAND48)

CHECK_FUNCTION_EXISTS(drand48   HAVE_DRAND48)

CHECK_FUNCTION_EXISTS(sleep     HAVE_SLEEP)



CHECK_FUNCTION_EXISTS(gettimeofday  HAVE_GETTIMEOFDAY)



INCLUDE(CheckLibraryExists)

CHECK_LIBRARY_EXISTS(rt clock_gettime "time.h" HAVE_CLOCK_GETTIME)

IF(HAVE_CLOCK_GETTIME)

CHECK_LIBRARY_EXISTS(rt clock_gettime "time.h" HAVE_CLOCK_GETTIME_RT)

IF(HAVE_CLOCK_GETTIME_RT)

  SET(RT_LIBRARY "rt")

ENDIF(HAVE_CLOCK_GETTIME)

  SET(HAVE_CLOCK_GETTIME ON)

ELSE(HAVE_CLOCK_GETTIME_RT)

  CHECK_SYMBOL_EXISTS(clock_gettime "time.h" HAVE_CLOCK_GETTIME)

ENDIF(HAVE_CLOCK_GETTIME_RT)



INCLUDE(CheckIncludeFiles)

CHECK_INCLUDE_FILES(float.h     HAVE_FLOAT_H)
@@ -122,6 +158,7 @@ CHECK_INCLUDE_FILES(sys/stat.h HAVE_SYS_STAT_H) 
CHECK_INCLUDE_FILES(sys/types.h HAVE_SYS_TYPES_H)

CHECK_INCLUDE_FILES(sys/wait.h  HAVE_SYS_WAIT_H)

CHECK_INCLUDE_FILES(sys/time.h  HAVE_SYS_TIME_H)

CHECK_INCLUDE_FILES(time.h      HAVE_TIME_H)

CHECK_INCLUDE_FILES(values.h    HAVE_VALUES_H)

CHECK_INCLUDE_FILES(unistd.h    HAVE_UNISTD_H)

CHECK_INCLUDE_FILES(dirent.h    HAVE_DIRENT_H)
@@ -134,10 +171,14 @@ CHECK_INCLUDE_FILES(inttypes.h HAVE_INTTYPES_H) 
CHECK_INCLUDE_FILES(string.h    HAVE_STRING_H)

CHECK_INCLUDE_FILES(strings.h   HAVE_STRINGS_H)

CHECK_INCLUDE_FILES(pwd.h       HAVE_PWD_H)

CHECK_INCLUDE_FILES(sys/select.h    HAVE_SYS_SELECT_H)





ADD_DEFINITIONS(-DHAVE_CONFIG_H)

ADD_DEFINITIONS(-DMINC2=1)



IF(NOT APPLE)

ADD_DEFINITIONS(-D_XOPEN_SOURCE=500)

ENDIF(NOT APPLE)

# aliases

SET(VERSION "${LIBMINC_EXTERNAL_LIB_PREFIX}${LIBMINC_PACKAGE_VERSION}")

SET(HAVE_MINC1 ${LIBMINC_MINC1_SUPPORT})
@@ -157,6 +198,15 @@ IF(LIBMINC_BUILD_EZMINC) 
   )

ENDIF(LIBMINC_BUILD_EZMINC)



IF(NIFTI_FOUND)

    SET(LIBMINC_NIFTI_SUPPORT ON)

    SET(LIBMINC_NIFTI_SOURCES

      volume_io/Volumes/input_nifti.c

      volume_io/Volumes/input_mgh.c

      volume_io/Volumes/input_nrrd.c

    )

ENDIF(NIFTI_FOUND)



# config files for build

CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.cmake ${CMAKE_CURRENT_BINARY_DIR}/config.h @ONLY)
@@ -167,38 +217,46 @@ CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.cmake ${CMAKE_CURRENT_BINARY 
INCLUDE_DIRECTORIES(

   ${CMAKE_CURRENT_SOURCE_DIR}

   ${CMAKE_CURRENT_BINARY_DIR}

   ${CMAKE_CURRENT_SOURCE_DIR}/libcommon

   ${CMAKE_CURRENT_SOURCE_DIR}/libsrc2

   ${CMAKE_CURRENT_SOURCE_DIR}/libsrc

   ${CMAKE_CURRENT_SOURCE_DIR}/volume_io/Include

   ${CMAKE_CURRENT_SOURCE_DIR}/ezminc

   ${CMAKE_CURRENT_SOURCE_DIR}/nifti

   ${HDF5_INCLUDE_DIR}

   ${HDF5_INCLUDE_DIRS}

   )



IF(LIBMINC_NIFTI_SUPPORT)

    INCLUDE_DIRECTORIES(

        ${NIFTI_INCLUDE_DIR}

    )

ENDIF(LIBMINC_NIFTI_SUPPORT)



SET(minc_common_SRCS

   libsrc/time_stamp.c

   libsrc/read_file_names.c

   libsrc/ParseArgv.c

   libsrc/restructure.c

  libcommon/minc2_error.c

  libcommon/minc_config.c

  libcommon/minc_error.c

  libcommon/ParseArgv.c

  libcommon/read_file_names.c

  libcommon/restructure.c

  libcommon/time_stamp.c

)



SET(minc_common_HEADERS

  libsrc/time_stamp.h

  libsrc/ParseArgv.h 

  libsrc/read_file_names.h

  libsrc/restructure.h

  volume_io/Include/volume_io.h

  nifti/nifti1.h

  nifti/nifti1_io.h

  nifti/znzlib.h

  libcommon/minc2_error.h

  libcommon/minc_config.h

  libcommon/minc_error.h

  libcommon/ParseArgv.h

  libcommon/read_file_names.h

  libcommon/restructure.h

  libcommon/time_stamp.h

  libcommon/minc_common_defs.h

  volume_io/Include/volume_io.h # VF: WTF?

)



# some variables

SET(minc1_LIB_SRCS

   libsrc/dim_conversion.c

   libsrc/image_conversion.c

   libsrc/minc_convenience.c

   libsrc/minc_error.c

   libsrc/nd_loop.c

   libsrc/netcdf_convenience.c

   libsrc/value_conversion.c
@@ -232,7 +290,6 @@ SET(minc2_LIB_SRCS 
   libsrc2/valid.c

   libsrc2/volprops.c

   libsrc2/volume.c

   libsrc2/minc2_error.c

   )



SET(minc2_HEADERS
@@ -240,7 +297,6 @@ SET(minc2_HEADERS 
  libsrc2/minc2_defs.h 

  libsrc2/minc2_structs.h 

  libsrc2/minc2_api.h 

  libsrc2/minc2_error.h

)



# volume_io2
@@ -281,12 +337,16 @@ SET(volume_io_LIB_SRCS 
   volume_io/Volumes/volumes.c

   volume_io/Volumes/input_mnc2.c

   volume_io/Volumes/output_mnc2.c

   volume_io/Volumes/input_mgh.c

   volume_io/Volumes/input_nifti.c

   nifti/nifti1_io.c

   nifti/znzlib.c

)



IF(LIBMINC_NIFTI_SUPPORT)

    SET(volume_io_LIB_SRCS 

        ${volume_io_LIB_SRCS}

        ${LIBMINC_NIFTI_SOURCES}

    )

ENDIF(LIBMINC_NIFTI_SUPPORT)





SET(volume_io_HEADERS

    volume_io/Include/volume_io/alloc.h

    volume_io/Include/volume_io/arrays.h
@@ -314,12 +374,21 @@ ELSE(LIBMINC_BUILD_SHARED_LIBS) 
  SET(LIBMINC_LIBRARY_STATIC ${LIBMINC_LIBRARY})

ENDIF(LIBMINC_BUILD_SHARED_LIBS)



SET(LIBMINC_LIBRARIES ${LIBMINC_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARY} ${RT_LIBRARY})

SET(LIBMINC_STATIC_LIBRARIES ${LIBMINC_LIBRARY_STATIC} ${HDF5_LIBRARY} ${ZLIB_LIBRARY} ${RT_LIBRARY})

IF(LIBMINC_NIFTI_SUPPORT)

    SET(NIFTI_LIBRARIES 

        ${NIFTI_LIBRARY} ${ZNZ_LIBRARY}

    )

ELSE(LIBMINC_NIFTI_SUPPORT)

    SET(NIFTI_LIBRARIES )

ENDIF(LIBMINC_NIFTI_SUPPORT)





SET(LIBMINC_LIBRARIES ${LIBMINC_LIBRARY} ${HDF5_LIBRARIES} ${NIFTI_LIBRARIES} ${ZLIB_LIBRARY})

SET(LIBMINC_STATIC_LIBRARIES ${LIBMINC_LIBRARY_STATIC} ${HDF5_LIBRARIES} ${NIFTI_LIBRARIES} ${ZLIB_LIBRARY})



IF(UNIX)

  SET(LIBMINC_LIBRARIES ${LIBMINC_LIBRARIES} m dl)

  SET(LIBMINC_STATIC_LIBRARIES ${LIBMINC_STATIC_LIBRARIES} m dl)

  SET(LIBMINC_LIBRARIES ${LIBMINC_LIBRARIES} m dl ${RT_LIBRARY})

  SET(LIBMINC_STATIC_LIBRARIES ${LIBMINC_STATIC_LIBRARIES} m dl  ${RT_LIBRARY})

ENDIF(UNIX)



SET(minc_LIB_SRCS ${minc2_LIB_SRCS} ${minc_common_SRCS})
@@ -333,14 +402,26 @@ ENDIF(LIBMINC_MINC1_SUPPORT) 


# Keep this variable for compatibility

SET(VOLUME_IO_LIBRARY  ${LIBMINC_EXTERNAL_LIB_PREFIX}minc2)

SET(CMAKE_INSTALL_RPATH ${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX})



ADD_LIBRARY(${LIBMINC_LIBRARY} ${LIBRARY_TYPE} ${minc_LIB_SRCS} ${minc_HEADERS} ${volume_io_LIB_SRCS} ${volume_io_HEADERS} )

TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARY} ${RT_LIBRARY}) # 



IF(NIFTI_FOUND AND NOT LIBMINC_USE_SYSTEM_NIFTI)

    ADD_DEPENDENCIES(${LIBMINC_LIBRARY} NIFTI)

ENDIF()





TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY} ${HDF5_LIBRARIES} ${NIFTI_LIBRARIES} ${ZLIB_LIBRARY} ${RT_LIBRARY}) #



IF(LIBMINC_MINC1_SUPPORT)

  INCLUDE_DIRECTORIES(${NETCDF_INCLUDE_DIR})

  TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY} ${NETCDF_LIBRARY})

ENDIF(LIBMINC_MINC1_SUPPORT)



IF(NOT LIBMINC_USE_SYSTEM_NIFTI AND NOT LIBMINC_EXTERNALLY_CONFIGURED)

  ADD_DEPENDENCIES(minc2 NIFTI)

ENDIF(NOT LIBMINC_USE_SYSTEM_NIFTI  AND NOT LIBMINC_EXTERNALLY_CONFIGURED)



EXPORT(TARGETS ${LIBMINC_LIBRARY} FILE "${LIBMINC_EXPORTED_TARGETS}.cmake")



IF(UNIX)
@@ -348,7 +429,7 @@ IF(UNIX) 


  IF(LIBMINC_BUILD_SHARED_LIBS)

    ADD_LIBRARY(${LIBMINC_LIBRARY_STATIC} STATIC ${minc_LIB_SRCS} ${minc_HEADERS} ${volume_io_LIB_SRCS} ${volume_io_HEADERS} )

    TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY_STATIC} ${HDF5_LIBRARY} ${ZLIB_LIBRARY} ${RT_LIBRARY} m dl )

    TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY_STATIC} ${HDF5_LIBRARY} ${NIFTI_LIBRARIES} ${ZLIB_LIBRARY} ${RT_LIBRARY} m dl )

    IF(LIBMINC_MINC1_SUPPORT)

      TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY} ${NETCDF_LIBRARY})

    ENDIF(LIBMINC_MINC1_SUPPORT)
@@ -390,9 +471,9 @@ SET(LIBMINC_USE_FILE_CONFIG ${CMAKE_CURRENT_BINARY_DIR}/UseLIBMINC.cmake) 


SET(LIBMINC_INCLUDE_DIRS_CONFIG

  ${CMAKE_CURRENT_SOURCE_DIR}

  ${CMAKE_CURRENT_SOURCE_DIR}/libcommon

  ${CMAKE_CURRENT_SOURCE_DIR}/libsrc2

  ${CMAKE_CURRENT_SOURCE_DIR}/volume_io/Include

  ${CMAKE_CURRENT_SOURCE_DIR}/nifti

)



IF(LIBMINC_MINC1_SUPPORT)
@@ -433,8 +514,13 @@ IF(SUPERBUILD_STAGING_PREFIX) 
  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" EZMINC_LIBRARIES            "${EZMINC_LIBRARIES}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" NETCDF_INCLUDE_DIR          "${NETCDF_INCLUDE_DIR}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" HDF5_INCLUDE_DIR            "${HDF5_INCLUDE_DIR}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" HDF5_INCLUDE_DIRS           "${HDF5_INCLUDE_DIRS}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" NIFTI_INCLUDE_DIR           "${NIFTI_INCLUDE_DIR}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" NETCDF_LIBRARY              "${NETCDF_LIBRARY}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" HDF5_LIBRARY                "${HDF5_LIBRARY}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" HDF5_LIBRARIES              "${HDF5_LIBRARIES}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" NIFTI_LIBRARY               "${NIFTI_LIBRARY}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" ZNZ_LIBRARY                 "${ZNZ_LIBRARY}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" ZLIB_LIBRARY                "${ZLIB_LIBRARY}")

  STRING(REPLACE "${SUPERBUILD_STAGING_PREFIX}/" "" ZLIB_LIBRARIES              "${ZLIB_LIBRARIES}")

ENDIF(SUPERBUILD_STAGING_PREFIX)

ChangeLog

+34 −1
Original line number Diff line number Diff line 
2016-05-05  Robert D. Vincent <robert.d.vincent@mcgill.ca>

   * libsrc/minc_simple.c, libsrc/minc_simple.h: Improved the usefulness

	of minc_get_world_transform() and added minc_transform_to_world().



2016-02-09  Robert D. Vincent <robert.d.vincent@mcgill.ca>

   * libsrc2/dimension.c, libsrc2/volume.c, testdir/minc2-dimension-test.c:

	Existing code did not properly implement miset_dimension_widths()

	and miget_dimension_widths().



2015-11-16  Robert D. Vincent <robert.d.vincent@mcgill.ca>

   * volume_io/Volumes/volumes.c,

     volume_io/Include/volume_io/vol_io_protoypes.h: Added

	copy_volume_new_type() and declared that

	get_volume_total_n_voxels() returns size_t.

   * testdir/volume_test.c: Created a simple test for volume functions.

   * CMakeLists.txt: Updated LIBMINC_SOVERSION



2015-10-14  Robert D. Vincent <robert.d.vincent@mcgill.ca>

   * volume_io/Volumes/input_mgh.c: Fix loading of time-varying MGZ files.



2015-10-07  Robert D. Vincent <robert.d.vincent@mcgill.ca>

   * libsrc2/m2util.c, libsrc2/volume.c: Fix improper handling of

	label volumes on big-endian architectures.



-- Release of minc 2.3.00 --

2015-10-01  Vladimir S. FONOV <vladimir.fonov@gmail.com>

   * Added new configuration environment variable MINC_FILE_CACHE_MB, 

  it specifies (in megabytes) maximum per file cache for reading MINC2 files

  default value is 100 Mb. **WARNING** specifying value of 0 will 

  significantly degrade performance on compressed minc2 files.

  

   * Added new configuration environment variable MINC_CHECKSUM, when 

   set to 1 will enable FLETCHER32 checksum in new MINC2 files, but only when 

   chunking is enabled

   

2015-09-11  Robert D. Vincent <robert.d.vincent@mcgill.ca>

   * Remove autoconf/automake support.

LIBMINCConfig.cmake.in

+5 −0
Original line number Diff line number Diff line
@@ -7,12 +7,17 @@ set(HAVE_MINC2 1) 
set(HAVE_EZMINC   @LIBMINC_MINC1_SUPPORT@)

set(HAVE_MINC1    @LIBMINC_MINC1_SUPPORT@)



set(LIBMINC_NIFTI_SUPPORT @LIBMINC_NIFTI_SUPPORT@)



set(NETCDF_INCLUDE_DIR "@NETCDF_INCLUDE_DIR@")

set(HDF5_INCLUDE_DIR   "@HDF5_INCLUDE_DIR@")

set(NIFTI_INCLUDE_DIR  "@NIFTI_INCLUDE_DIR@")



set(NETCDF_LIBRARY     "@NETCDF_LIBRARY@")

set(HDF5_LIBRARY       "@HDF5_LIBRARY@")

set(ZLIB_LIBRARY       "@ZLIB_LIBRARY@")

set(ZLIB_LIBRARIES     "@ZLIB_LIBRARY@")

set(NIFTI_LIBRARIES    "@NIFTI_LIBRARIES@")



set(LIBMINC_INCLUDE_DIRS "@LIBMINC_INCLUDE_DIRS_CONFIG@")

set(LIBMINC_LIBRARY_DIRS "@LIBMINC_LIBRARY_DIRS_CONFIG@")

README

+25 −1
Original line number Diff line number Diff line
@@ -78,8 +78,32 @@ MINC_LOGFILE = [+]<pathname>|stdout|- 
MINC_LOGLEVEL = 0-4





# Maximum memory buffer, used in some minc programs

#

MINC_MAX_FILE_BUFFER_KB = <N>



# Maximum allocated memory, used in some minc programs

#

MINC_MAX_MEMORY_KB = <N>



# Memory cache for MINC2 files, per open file

#

MINC_FILE_CACHE_MB = <N>



# Creation of HDF5 checksums for the volume, only works for MINC2 

# file format 

# default 0

#

MINC_CHECKSUM = {1,0}



# Prefer using MINC2 API inside Volume IO

# default 0

#

MINC_PREFER_V2_API = {1,0}







DOCUMENTATION

-------------



http://en.wikibooks.org/wiki/MINC