debian/changelog

+libncl (2.1.21+git20190531.feceb81-1) unstable; urgency=medium
+
+  * Fix symbols file
+    Closes: #925752
+  * New upstream version
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Install pkgconfig file
+
+ -- Andreas Tille <tille@debian.org>  Tue, 20 Aug 2019 15:05:39 +0200
+
 libncl (2.1.21+git20180827.c71b264-2) unstable; urgency=medium
 
   * Rebuild for new version of gcc to fix symbols

debian/compat

-11

debian/control

@@ -3,10 +3,10 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                d-shlibs,
                python
-Standards-Version: 4.3.0
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/libncl
 Vcs-Git: https://salsa.debian.org/med-team/libncl.git
 Homepage: https://github.com/mtholder/ncl

debian/rules

@@ -16,9 +16,11 @@ override_dh_clean:
 
 override_dh_install:
 	dh_install
-	# bash debian/
 	d-shlibmove --commit \
 		    --multiarch \
 		    --devunversioned \
 		    --movedev "debian/tmp/usr/include/ncl/*.h" usr/include/ncl \
+		    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \
                         debian/tmp/usr/lib/*/libncl.so
+        # dh_missing found this but it should not be installed
+	rm -f debian/tmp/usr/include/ncl/nxsblock.cpp

example/splitsinfile/splitsstructs.cpp

 #include "splitsstructs.h"
+#include <algorithm>
 bool TreesToSplits::gTrackTrivial = false;
 bool TreesToSplits::gTreatAsRooted = false;
 bool TreesToSplits::gTrackFreq = false;

ncl/nxstaxablock.h

@@ -214,7 +214,7 @@ class NxsTaxaBlock
 			taxLabels = other.taxLabels;
 			labelToIndex = other.labelToIndex;
 			dimNTax = other.dimNTax;
-			taxSets = taxSets;
+			taxSets = other.taxSets;
 			taxPartitions = other.taxPartitions;
 			inactiveTaxa = other.inactiveTaxa;
 			}