debian/changelog

 librcsb-core-wrapper (1.005-6) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * Drop unneeded get-orig-source target
   * Fix build error with gcc-8
     Closes: #897795
-
-  TODO: While the gcc-8 bug is fixed the build system is somehow messed
-        up.  No idea how to fix this for the moment
-
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.2.1
   * Testsuite: autopkgtest-pkg-python
   * No Priority: extra
   * Drop ancient field X-Python-Version
 
+  [ Michael R. Crusoe ]
+  * Adapt patches for latest boost version
+  * debian/watch: use secure HTTPS URL
+
  -- Andreas Tille <tille@debian.org>  Fri, 27 Jul 2018 01:12:37 +0200
 
 librcsb-core-wrapper (1.005-5) unstable; urgency=medium

debian/control

@@ -8,6 +8,7 @@ Priority: optional
 Build-Depends: debhelper (>= 10),
                doxygen,
                graphviz,
+	       dh-python,
                libboost-python-dev,
                libxerces-c-dev,
                python-all-dev,
@@ -60,6 +61,7 @@ Description: documentation for librcsb-core-wrapper0
 Package: python-corepywrap
 Architecture: any
 Section: python
+Provides: ${python:Provides}
 Depends: ${shlibs:Depends},
          ${misc:Depends},
          ${python:Depends},

debian/patches/gcc-8.patch

-Description: Fix build error with gcc-8
- "error: catching polymorphic type 'class std::exception' by value [-Werror=catch-value=]"
- -> This should be a reference
+Description: Stop building with -Werror
+ This works around a FTBFS with gcc 8.
+Author: Adrian Bunk <bunk@debian.org>
 Bug-Debian: https://bugs.debian.org/897795
-Author: Andreas Tille <tille@debian.org>
-Last-Update: Thu, 26 Jul 2018 16:06:21 +0200
 
---- a/common/src/GenString.C
-+++ b/common/src/GenString.C
-@@ -536,7 +536,7 @@ bool String::IsNumber(const string& inSt
+--- librcsb-core-wrapper.orig/etc/make.platform.gnu4
++++ librcsb-core-wrapper/etc/make.platform.gnu4
+@@ -34,7 +34,7 @@
  
-         return (true);
-     }
--    catch (exception)
-+    catch (std::exception &exception)
-     {
-         return (false);
-     }
+ # WARNINGS_AS_ERRORS defines flags to instruct all compilers to treat all
+ # warnings as errors.
+-WARNINGS_AS_ERRORS=-Werror
++#WARNINGS_AS_ERRORS=-Werror
+ 
+ # ALL_WARNINGS defines flags to instruct all compilers to report all
+ # warnings.

debian/patches/setup.py.in

@@ -2,7 +2,7 @@ Author: Laszlo Kajan <lkajan@rostlab.org>
 Description: python build system
 Forwarded: http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-August/016975.html
 --- /dev/null
-+++ b/wrapper/python/setup.py.in
++++ librcsb-core-wrapper/wrapper/python/setup.py.in
 @@ -0,0 +1,49 @@
 +#!/usr/bin/python
 +
@@ -51,11 +51,11 @@ Forwarded: http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-Au
 +		include_dirs = ['../../include'] + parse_cmd(extra_cmd, '-I'),
 +		library_dirs = ['../../lib/.libs'] + parse_cmd(extra_cmd, '-L'),
 +		extra_compile_args = parse_cmd(extra_cmd, '-D', True),
-+		libraries = ['rcsb-core-wrapper', 'boost_python-py%1d%1d' % ( sys.version_info[0], sys.version_info[1] )] + parse_cmd(extra_cmd, '-l'))],
++		libraries = ['rcsb-core-wrapper', 'boost_python%1d%1d' % ( sys.version_info[0], sys.version_info[1] )] + parse_cmd(extra_cmd, '-l'))],
 +)
---- a/wrapper/Makefile
-+++ b/wrapper/Makefile
-@@ -103,11 +103,16 @@ ALL_OBJ_FILES = *.o
+--- librcsb-core-wrapper.orig/wrapper/Makefile
++++ librcsb-core-wrapper/wrapper/Makefile
+@@ -103,11 +103,16 @@
  .PHONY: ../etc/Makefile.platform all install export clean clean_build
  
  
@@ -73,7 +73,7 @@ Forwarded: http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-Au
  
  export:
  	mkdir -p $(EXPORT_DIR)
-@@ -137,6 +142,7 @@ clean_build:
+@@ -137,6 +142,7 @@
  	@rm -f $(M_MOD_LIB)
  	@rm -f $(M_AGR_LIB)
  	@rm -f *.pyc
@@ -81,9 +81,9 @@ Forwarded: http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-Au
  
  
  $(L_MOD_LIB): $(OBJ_FILES) $(ALL_DEP_LIBS)
---- a/Makefile
-+++ b/Makefile
-@@ -12,7 +12,11 @@ DOC_SCRIPT = doc.sh
+--- librcsb-core-wrapper.orig/Makefile
++++ librcsb-core-wrapper/Makefile
+@@ -12,7 +12,11 @@
  CLEAN_DOC_SCRIPT = clean_doc.sh
  EXPORT_SCRIPT = export.sh
  

debian/watch

 # Compulsory line, this is a version 3 file
 version=3
 
-http://sw-tools.rcsb.org/apps/CORE-WRAPPER/source/source.html core-wrapper-v([\d.]+)-prod-src\.tar\..z
+https://sw-tools.rcsb.org/apps/CORE-WRAPPER/source/source.html core-wrapper-v([\d.]+)-prod-src\.tar\..z