debian/changelog

@@ -14,7 +14,6 @@ libsbml (5.17.2+dfsg-1) UNRELEASED; urgency=medium
   * Provide Python3 instead of Python2 bindings (SBML can only provide
     either Python2 or Python3 - lets do the switch now)
     Closes: #847013
-  * Testsuite: autopkgtest-pkg-python
   * Secure URI in copyright format
   * Drop useless get-orig-source target
   * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
@@ -27,6 +26,7 @@ libsbml (5.17.2+dfsg-1) UNRELEASED; urgency=medium
     the R build)
   * Do not provide Java doc since there are errors when creating it
     and this solution was suggested by the Debian Java team
+  * Fix Perl interpreter path
 
  -- Andreas Tille <tille@debian.org>  Tue, 15 Jan 2019 18:10:07 +0100
 

debian/control

@@ -3,7 +3,6 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Ivo Maintz <ivo@maintz.de>,
            Andreas Tille <tille@debian.org>
 Section: science
-Testsuite: autopkgtest-pkg-python
 Priority: optional
 Build-Depends: debhelper (>= 12~),
                cmake,
@@ -60,7 +59,7 @@ Description: System Biology Markup Language library
  application itself (though it does come with many example programs),
  but rather a library you can embed in your own applications.
 
-Package: python3-libsbml5
+Package: python3-sbml5
 Architecture: any
 Section: python
 Depends: ${shlibs:Depends},
@@ -190,7 +189,7 @@ Description: System Biology Markup Language library -- Perl documentation
  .
  This package contains documentation for Perl bindings
 
-Package: python3-libsbml5-doc
+Package: python3-sbml5-doc
 Architecture: all
 Section: doc
 Depends: ${misc:Depends}

debian/libsbml5-cil-doc.links

-usr/share/doc/libsbml5-cil-doc/csharp-api usr/share/doc/libsbml5/csharp-api
+usr/share/doc/libsbml5-cil/csharp-api usr/share/doc/libsbml5/csharp-api

debian/libsbml5-perl-doc.links

-usr/share/doc/libsbml5-perl-doc/perl-api usr/share/doc/libsbml5/perl-api
+usr/share/doc/libsbml5-perl/perl-api usr/share/doc/libsbml5/perl-api

debian/patches/swig-3.x.patch

 Author: Logan Rosen <logan@ubuntu.com>
 Date: Thu, 19 Nov 2015 20:12:02 UTC
 Bug-Debian: https://bugs.debian.org/805584
-Description: Build with with SWIG 3.x
+Description: Build with SWIG 3.x
 
 --- a/src/bindings/csharp/local.i
 +++ b/src/bindings/csharp/local.i

debian/python3-libsbml5-doc.links

-usr/share/doc/python3-libsbml5-doc/python-api usr/share/doc/libsbml5/python-api

debian/python3-libsbml5-doc.doc-base → debian/python3-sbml5-doc.doc-base

-Document: python3-libsbml5
+Document: python3-sbml5
 Title: libsbml5 Python3 API
 Abstract: System Biology Markup Language library
  LibSBML is a library designed to help you read, write, manipulate,
@@ -8,5 +8,5 @@ Abstract: System Biology Markup Language library
 Section: Programming/Python
 
 Format: HTML
-Files: /usr/share/doc/python3-libsbml5/python-api/*.html
-Index: /usr/share/doc/python3-libsbml5/python-api/index.html
+Files: /usr/share/doc/python3-sbml5/python-api/*.html
+Index: /usr/share/doc/python3-sbml5/python-api/index.html

debian/python3-sbml5-doc.links

+usr/share/doc/python3-sbml5/python-api usr/share/doc/libsbml5/python-api

debian/rules

@@ -99,5 +99,14 @@ ifdef BIND_MATLAB
 	dpkg-shlibdeps $(debtmp)/usr/lib/*.mex* -Tdebian/libsbml5-matlab.substvars
 endif
 
+override_dh_install:
+	dh_install
+	for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
+	    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done
+
 override_dh_installchangelogs:
 	dh_installchangelogs NEWS.txt
+
+override_dh_dwz:
+	echo "Skip dwz: Too few files for multifile optimization"