debian/changelog

-libsbml (5.17.2+dfsg-1) UNRELEASED; urgency=medium
+libsbml (5.17.2+dfsg-1) unstable; urgency=medium
 
   [ gregor herrmann ]
   * Fix Perl installdir
@@ -11,6 +11,7 @@ libsbml (5.17.2+dfsg-1) UNRELEASED; urgency=medium
   * debhelper 12
   * Deal with issue in doclets by removing docs/src/SBMLDoclet.java
   * Remove libsbml-java-doc since doc does not build properly
+    Closes: #901455, #911482
   * Provide Python3 instead of Python2 bindings (SBML can only provide
     either Python2 or Python3 - lets do the switch now)
     Closes: #847013
@@ -27,8 +28,9 @@ libsbml (5.17.2+dfsg-1) UNRELEASED; urgency=medium
   * Do not provide Java doc since there are errors when creating it
     and this solution was suggested by the Debian Java team
   * Fix Perl interpreter path
+  * d/copyright: examples have MIT license
 
- -- Andreas Tille <tille@debian.org>  Tue, 15 Jan 2019 18:10:07 +0100
+ -- Andreas Tille <tille@debian.org>  Thu, 17 Jan 2019 12:12:21 +0100
 
 libsbml (5.16.0+dfsg-2) unstable; urgency=medium
 

debian/copyright

@@ -7,12 +7,47 @@ Files-Excluded:
  macosx
 
 Files: *
-Copyright: 2005-2012 SBML-TEAM mailto:sbml-team@caltech.edu
+Copyright: 2005-2019 SBML-TEAM <sbml-team@caltech.edu>
 License: LGPL-2.1
 
+Files: examples/*
+Copyright: 2005-2019 SBML-TEAM <sbml-team@caltech.edu>
+License: MIT
+ This sample program is distributed under a different license than the rest
+ of libSBML.  This program uses the open-source MIT license, as follows:
+ .
+ Copyright (c) 2013-2018 by the California Institute of Technology
+ (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
+ and the University of Heidelberg (Germany), with support from the National
+ Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
+ .
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, sublicense,
+ and/or sell copies of the Software, and to permit persons to whom the
+ Software is furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+ THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
+ .
+ Neither the name of the California Institute of Technology (Caltech), nor
+ of the European Bioinformatics Institute (EMBL-EBI), nor of the University
+ of Heidelberg, nor the names of any contributors, may be used to endorse
+ or promote products derived from this software without specific prior
+ written permission.
+
 Files: debian/*
 Copyright: 2012-2015 Ivo Maintz <ivo@maintz.de>
-           2014-2018 Andreas Tille <tille@debian.org>
+           2014-2019 Andreas Tille <tille@debian.org>
 License: GPL-2.0+
 
 License: GPL-2.0+

debian/rules

@@ -99,8 +99,8 @@ ifdef BIND_MATLAB
 	dpkg-shlibdeps $(debtmp)/usr/lib/*.mex* -Tdebian/libsbml5-matlab.substvars
 endif
 
-override_dh_install:
-	dh_install
+override_dh_installexamples:
+	dh_installexamples
 	for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
 	    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
 	done