Attempt to replace ch.systemsx.cisd.args4j by org.kohsuke.args4j but failed.

use_debian_packaged_libs.patch

use_jaxb.patch

use_debian_packaged_args4j.patch

Author: Andreas Tille <tille@debian.org>

Last-Update: Thu, 20 Sep 2018 15:11:52 +0200

Description: Try whether we can use the Debian packaged args4j.jar instead

 of the renamed convenience copy

 .

 Unfortunately this does not work:

 .

  invalid Class-Path header in manifest of jar file: /usr/share/maven-repo/org/debian/maven/maven-repo-helper/debian/maven-repo-helper-debian.jar

 ----------

 1. ERROR in /build/libsis-jhdf5-java-18.09.0-pre1+dfsg/source/java/ch/systemsx/cisd/hdf5/h5ar/HDF5ArchiverMain.java (at line 119)

         @Option(name = "i", longName = "include", metaVar = "REGEX", skipForExample = true, usage = "Regex of files to include")

                             ^^^^^^^^

 The attribute longName is undefined for the annotation type Option

 ----------

 2. ERROR in /build/libsis-jhdf5-java-18.09.0-pre1+dfsg/source/java/ch/systemsx/cisd/hdf5/h5ar/HDF5ArchiverMain.java (at line 119)

         @Option(name = "i", longName = "include", metaVar = "REGEX", skipForExample = true, usage = "Regex of files to include")

                                                                      ^^^^^^^^^^^^^^

 The attribute skipForExample is undefined for the annotation type Option

 ----------

 3. ERROR in /build/libsis-jhdf5-java-18.09.0-pre1+dfsg/source/java/ch/systemsx/cisd/hdf5/h5ar/HDF5ArchiverMain.java (at line 122)

         @Option(name = "e", longName = "exclude", metaVar = "REGEX", usage = "Regex of files to exclude")

                             ^^^^^^^^

 ...

--- a/source/java/ch/systemsx/cisd/hdf5/h5ar/HDF5ArchiverMain.java

+++ b/source/java/ch/systemsx/cisd/hdf5/h5ar/HDF5ArchiverMain.java

@@ -28,11 +28,11 @@ import hdf.hdf5lib.exceptions.HDF5Librar

 import org.apache.commons.io.FilenameUtils;

-import ch.systemsx.cisd.args4j.Argument;

-import ch.systemsx.cisd.args4j.CmdLineException;

-import ch.systemsx.cisd.args4j.CmdLineParser;

-import ch.systemsx.cisd.args4j.ExampleMode;

-import ch.systemsx.cisd.args4j.Option;

+import org.kohsuke.args4j.Argument;

+import org.kohsuke.args4j.CmdLineException;

+import org.kohsuke.args4j.CmdLineParser;

+import org.kohsuke.args4j.ExampleMode;

+import org.kohsuke.args4j.Option;

 import ch.systemsx.cisd.base.exceptions.IErrorStrategy;

 import ch.systemsx.cisd.hdf5.BuildAndEnvironmentInfo;

 import ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersionBounds;