New upstream version 18.09.0~pre1+git20180925.eb8733c+dfsg (76578b6e) · Commits · Debian Med / libsis-jhdf5-java

.classpath

+2 −2

Original line number	Diff line number	Diff line
		@@ -13,9 +13,9 @@
		<classpathentry kind="lib" path="libs/test/objenesis-1.0.jar"/>
		<classpathentry kind="lib" path="libs/test/testng-jdk15.jar"/>
		<classpathentry kind="lib" path="libs/build/ecj-4.6.1.jar"/>
		<classpathentry kind="lib" path="libs/prod/cisd-args4j-9.11.2.jar" sourcepath="libs/prod/cisd-args4j-9.11.2-sources.jar"/>
		<classpathentry kind="lib" path="libs/prod/commons-lang3-3.7.jar" sourcepath="libs/prod/commons-lang3-3.7-sources.jar"/>
		<classpathentry kind="lib" path="libs/prod/commons-io-2.6.jar" sourcepath="libs/prod/commons-io-2.6-sources.jar"/>
		<classpathentry kind="lib" path="libs/prod/sis-base-18.08.0.jar" sourcepath="libs/prod/sis-base-18.08.0-sources.jar"/>
		<classpathentry kind="lib" path="libs/prod/sis-base-18.09-pre1.jar" sourcepath="libs/prod/sis-base-18.09-pre1-sources.jar"/>
		<classpathentry kind="lib" path="libs/prod/args4j-2.33.jar"/>
		<classpathentry kind="output" path="targets/classes"/>
		</classpath>

build.gradle

+58 −37

Original line number	Diff line number	Diff line
		@@ -11,8 +11,41 @@ tasks.withType(Test) {
		systemProperty "java.library.path", "libs/native/jhdf5/amd64-Linux:libs/native/jhdf5/amd64-Linux:libs/native/jhdf5/x86_64-Mac OS X:libs/native/jhdf5/x86_64-Mac OS X"
		}

		def execute(command, arguments) {
		new ByteArrayOutputStream().withStream { os ->
		print "execute: ${command}"
		arguments.collect({print " ${it}"})
		println ''
		def result = exec {
		executable = command
		args = arguments
		standardOutput = os
		}
		return os.toString().split('\n')
		}
		}

		task processDistFiles( type: Copy) {
		into "$buildDir/output/dist"

		from ("dist") {
		exclude 'doc/JHDF5.odt'
		}

		from ("dist") {
		include 'doc/JHDF5.odt'
		rename { "JHDF5-${version}.odt" }
		}

		doLast {
		execute('lowriter', [ '--headless', '--convert-to', 'pdf', '--outdir', "$buildDir/output/dist/doc", "$buildDir/output/dist/doc/JHDF5-${version}.odt" ])
		}

		}

		jar {
		baseName "${project.group}-jhdf5"
		exclude '*/HDF5ArchiverMain.class'
		from('targets/dist') {
		include 'BUILD*INFO'
		}
		@@ -21,9 +54,24 @@ jar {
		include 'native/jhdf5///*'
		}

		manifest {
		attributes 'Main-Class': 'ch.systemsx.cisd.base.BuildAndEnvironmentInfo'
		attributes 'Class-Path': configurations.runtime.filter { !(it.getName().contains("-sources") \|\| it.getName().startsWith("cisd-args4j")) }.collect { it.getName() }.join(' ')
		}
		}

		task h5arCLIJar(type: Jar, dependsOn: [jar]) {
		archiveName "${project.group}-jhdf5-h5ar-cli-${version}.jar"
		from files(sourceSets.main.output.classesDir) {
		include '*/HDF5ArchiverMain.class'
		}
		from('targets/dist') {
		include 'BUILD*INFO'
		}

		manifest {
		attributes 'Main-Class': 'ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverMain'
		attributes 'Class-Path': configurations.runtime.collect { it.getName().contains("-sources") ? "" : it.getName() + " " }.join('')
		attributes 'Class-Path': "${project.group}-jhdf5-${version}.jar " + configurations.runtime.filter { !it.getName().contains("-sources") }.collect { it.getName() }.join(' ')
		}
		}

		@@ -54,14 +102,15 @@ task myJavadoc(type: Javadoc, dependsOn: [compileJava]) {
		exclude "ch/systemsx/cisd/hdf5/ReflectionUtils.java"
		}

		task javadocJar(type: Jar, dependsOn: myJavadoc) {
		task javadocJar(type: Jar, dependsOn: [myJavadoc, processDistFiles]) {
		archiveName "${project.group}-jhdf5-javadoc-${project.version}.jar"
		from javadoc.destinationDir
		from ("sourceExamples/java") {
		include '*/'
		}
		from ("dist/doc") {
		include 'JHDF5.pdf'
		from ("$buildDir/output/dist/doc") {
		include "JHDF5-${version}.pdf"
		rename { "JHDF5.pdf" }
		}

		from ("targets/dist") {
		@@ -83,39 +132,7 @@ task exampleJar(type: Jar) {

		}

		def execute(command, arguments) {
		new ByteArrayOutputStream().withStream { os ->
		print "execute: ${command}"
		arguments.collect({print " ${it}"})
		println ''
		def result = exec {
		executable = command
		args = arguments
		standardOutput = os
		}
		return os.toString().split('\n')
		}
		}

		task processDistFiles( type: Copy) {
		into "$buildDir/output/dist"

		from ("dist") {
		exclude 'doc/JHDF5.odt'
		}

		from ("dist") {
		include 'doc/JHDF5.odt'
		rename { "JHDF5-${version}.odt" }
		}

		doLast {
		execute('lowriter', [ '--headless', '--convert-to', 'pdf', '--outdir', "$buildDir/output/dist/doc", "$buildDir/output/dist/doc/JHDF5-${version}.odt" ])
		}

		}

		task distributionZip(type: Zip, dependsOn: [jar, javadocJar, sourcesJar, exampleJar, processDistFiles]) {
		task distributionZip(type: Zip, dependsOn: [jar, h5arCLIJar, javadocJar, sourcesJar, exampleJar, processDistFiles]) {
		baseName "${project.group}-jhdf5"

		from('targets/dist') {
		@@ -160,6 +177,10 @@ task distributionZip(type: Zip, dependsOn: [jar, javadocJar, sourcesJar, example
		into "${project.group}-jhdf5/lib"
		}

		from (h5arCLIJar.archivePath) {
		into "${project.group}-jhdf5/lib"
		}

		from (configurations.runtime) {
		exclude 'restriction'
		exclude 'bcel'

build/antrun.sh

deleted100755 → 0

+0 −10

Original line number	Diff line number	Diff line
		#! /bin/bash

		SCRIPT="$0"
		if [ "${SCRIPT}" = "${SCRIPT#/}" ]; then
		SCRIPT="`pwd`/${SCRIPT#./}"
		fi
		BINDIR="${SCRIPT%/*}"
		BASEDIR=${BINDIR%/*}
		cd $BASEDIR
		ant -lib ../build_resources/lib/ecj.jar -f build/build.xml "$@"

build/build.xml

deleted100644 → 0

+0 −441

Original line number	Diff line number	Diff line
		<project name="jhdf5" default="dist" basedir="..">
		<import file="../../build_resources/ant/build-common.xml" />
		<project-classpath name="ecp" classes="${classes}:${lib}/junit4/junit.jar" />

		<property name="mainfolder" value="sis-${ant.project.name}" />
		<property name="distfolder" value="${ant.project.name}" />
		<property name="jar.file" value="${dist}/sis-jhdf5.jar" />
		<property name="dist.file" value="${dist}/sis-jhdf5" />
		<property name="jar.batteries-included.filename"
		value="sis-jhdf5-batteries_included.jar" />
		<property name="jar.batteries-included.file" value="${dist}/${jar.batteries-included.filename}" />
		<property name="jar.core.file" value="${dist}/sis-jhdf5-core.jar" />
		<property name="jar.tools.file" value="${dist}/sis-jhdf5-tools.jar" />
		<property name="sources.examples" value="sourceExamples/java" />
		<property name="src.zip.file" value="${dist}/sis-jhdf5-src.zip" />
		<property name="examples.src.zip.file" value="${dist}/sis-jhdf5-examples-src.zip" />
		<property name="javadoc.zip.file" value="${dist}/sis-jhdf5-javadoc.zip" />
		<property name="test.jar.file" value="${dist}/sis-jhdf5-test.jar" />
		<property name="lib" value="../libraries" />
		<property name="original.dist" value="../${ant.project.name}/dist" />
		<property name="nativesrc" value="libs/native" />
		<property name="nativeroot" value="${targets}/ant" />
		<property name="native" value="${nativeroot}/native" />

		<property name="dist.hdf5" value="${dist}/${mainfolder}" />
		<property name="dist.hdf5.lib" value="${dist.hdf5}/lib" />

		<!--
		// Compile Java classes using the Eclipse compiler
		// Note: THIS IS A PRIVATE TARGET. It isn't intended to be used in other build scripts.
		// Parameter: src = source folder
		-->
		<target name="_plain-compile">
		<echo level="info">Compile all classes in ${basedir}/${src} and subfolders</echo>
		<javac srcdir="${src}"
		destdir="${classes}"
		classpath="${ecp}"
		source="1.7"
		target="1.7"
		encoding="UTF-8"
		debug="true">
		<compilerarg line="-warn:none" />
		</javac>
		<copy todir="${classes}">
		<fileset dir="${src}">
		<include name="*/.xml" />
		<include name="*/.xsd" />
		<include name="*/.properties" />
		<include name="*/.jpg" />
		<include name="*/.png" />
		<include name="*/.gif" />
		</fileset>
		</copy>
		</target>

		<target name="clean">
		<delete dir="${dist}" />
		<delete dir="${targets}/ant" />
		</target>

		<target name="jar-test" depends="clean, compile-tests">
		<mkdir dir="${dist.hdf5.lib}" />
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<copy todir="${native}">
		<fileset dir="${nativesrc}">
		<include name="**/libjhdf5.so" />
		<include name="**/libjhdf5.jnilib" />
		<include name="**/jhdf5.dll" />
		</fileset>
		</copy>
		<recursive-jar destfile="${test.jar.file}">
		<fileset dir="${classes}">
		<include name="*/.class" />
		<include name="${build.info.filename}" />
		</fileset>
		<fileset dir="${nativeroot}">
		<include name="native/*/.so" />
		<include name="native/*/.jnilib" />
		<include name="native/*/.dll" />
		</fileset>
		<fileset dir="${sources.test}/test/hdf5lib">
		<include name="*.hdf" />
		</fileset>
		<zipfileset src="${lib}/testng/testng-jdk15.jar" />
		<zipfileset src="${lib}/junit4/junit.jar" />
		<zipfileset src="${lib}/jmock/hamcrest/hamcrest-core.jar" />
		<zipfileset src="${lib}/sis-base/sis-base.jar" />
		<zipfileset src="${lib}/cisd-args4j/cisd-args4j.jar" />
		<zipfileset src="${lib}/commons-lang/commons-lang.jar" />
		<zipfileset src="${lib}/commons-io/commons-io.jar" />
		<manifest>
		<attribute name="Main-Class" value="ch.systemsx.cisd.hdf5.HDF5RoundtripTest" />
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		</manifest>
		</recursive-jar>
		</target>

		<target name="jar-complete" depends="compile">
		<mkdir dir="${dist.hdf5.lib}" />
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<copy todir="${native}">
		<fileset dir="${nativesrc}">
		<include name="**/libjhdf5.so" />
		<include name="**/libjhdf5.jnilib" />
		<include name="**/jhdf5.dll" />
		</fileset>
		</copy>
		<recursive-jar destfile="${jar.batteries-included.file}">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		<include name="*/.class" />
		</fileset>
		<fileset dir="${nativeroot}">
		<include name="native/*/.so" />
		<exclude name="native/*/-SunOS/*.so" />
		<include name="native/*/.jnilib" />
		<include name="native/*/.dll" />
		</fileset>
		<zipfileset src="${lib}/sis-base/sis-base.jar">
		<exclude name="${build.info.filename}" />
		<exclude name="native/*/-SunOS/*.so" />
		</zipfileset>
		<zipfileset src="${lib}/cisd-args4j/cisd-args4j.jar">
		<exclude name="${build.info.filename}" />
		<exclude name="**/AbstractBuildAndEnvironmentInfo.class" />
		</zipfileset>
		<zipfileset src="${lib}/commons-lang/commons-lang.jar">
		<exclude name="META-INF/LICENSE.txt" />
		<exclude name="META-INF/NOTICE.txt" />
		</zipfileset>
		<zipfileset src="${lib}/commons-io/commons-io.jar">
		<exclude name="META-INF/LICENSE.txt" />
		<exclude name="META-INF/NOTICE.txt" />
		</zipfileset>
		<manifest>
		<attribute name="Main-Class" value="ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverMain" />
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		</manifest>
		</recursive-jar>
		<recursive-jar destfile="${jar.file}">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		<include name="*/.class" />
		</fileset>
		<zipfileset src="${lib}/sis-base/sis-base.jar">
		<exclude name="${build.info.filename}" />
		<exclude name="native/**" />
		</zipfileset>
		<zipfileset src="${lib}/cisd-args4j/cisd-args4j.jar">
		<exclude name="${build.info.filename}" />
		<exclude name="**/AbstractBuildAndEnvironmentInfo.class" />
		</zipfileset>
		<zipfileset src="${lib}/commons-lang/commons-lang.jar">
		<exclude name="META-INF/LICENSE.txt" />
		<exclude name="META-INF/NOTICE.txt" />
		</zipfileset>
		<zipfileset src="${lib}/commons-io/commons-io.jar">
		<exclude name="META-INF/LICENSE.txt" />
		<exclude name="META-INF/NOTICE.txt" />
		</zipfileset>
		<manifest>
		<attribute name="Main-Class" value="ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverMain" />
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		<attribute name="Class-Path"
		value="hdf5-linux-intel.jar hdf5-macosx-intel.jar hdf5-windows-intel.jar" />
		</manifest>
		</recursive-jar>
		</target>

		<target name="examples-src-zip">
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<recursive-jar destfile="${examples.src.zip.file}">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		</fileset>
		<fileset dir="${sources.examples}">
		<include name="*/.java" />
		</fileset>
		<manifest>
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		</manifest>
		</recursive-jar>
		</target>

		<target name="src-zip">
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<recursive-jar destfile="${src.zip.file}">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		</fileset>
		<fileset dir="${sources}">
		<include name="*/.java" />
		</fileset>
		<manifest>
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		</manifest>
		</recursive-jar>
		</target>

		<target name="jar-core" depends="compile">
		<mkdir dir="${dist.hdf5.lib}" />
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<jar destfile="${jar.core.file}">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		<include name="*/.class" />
		<exclude name="*/io/.class" />
		<exclude name="*/h5ar/.class" />
		</fileset>
		<zipfileset src="${lib}/sis-base/sis-base.jar">
		<include name="ch/systemsx/cisd/base/utilities/AbstractBuildAndEnvironmentInfo.class" />
		</zipfileset>
		<manifest>
		<attribute name="Main-Class" value="ch.systemsx.cisd.hdf5.BuildAndEnvironmentInfo" />
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		</manifest>
		</jar>
		</target>

		<target name="jar-tools" depends="compile">
		<mkdir dir="${dist.hdf5.lib}" />
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<jar destfile="${jar.tools.file}">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		<include name="*/io/.class" />
		<include name="*/h5ar/.class" />
		<include name="ch/systems/cisd/hdf5/BuildAndEnvironmentInfo*.class" />
		</fileset>
		<zipfileset src="${lib}/sis-base/sis-base.jar">
		<include name="ch/systemsx/cisd/base/utilities/AbstractBuildAndEnvironmentInfo.class" />
		</zipfileset>
		<manifest>
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		<attribute name="Main-Class" value="ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverMain" />
		<attribute name="Class-Path"
		value="commons-lang.jar commons-io.jar sis-base.jar cisd-args4j.jar sis-jhdf5-core.jar hdf5-linux-intel.jar hdf5-macosx-intel.jar hdf5-windows-intel.jar" />
		</manifest>
		</jar>
		</target>

		<target name="jar-all"
		depends="jar-complete, src-zip, examples-src-zip, jar-core, jar-tools, jar-platforms" />

		<target name="jar-platforms"
		depends="jar-linux-intel, jar-macosx-intel, jar-windows-intel" />

		<target name="jar-linux-intel" depends="compile">
		<delete dir="${native}" />
		<mkdir dir="${native}" />
		<mkdir dir="${dist.hdf5.lib}" />
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<copy todir="${native}">
		<fileset dir="${nativesrc}">
		<include name="jhdf5/i386-Linux/libjhdf5.so" />
		<include name="jhdf5/amd64-Linux/libjhdf5.so" />
		<include name="jhdf5/arm-Linux/libjhdf5.so" />
		</fileset>
		</copy>
		<jar destfile="${dist}/hdf5-linux-intel.jar">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		</fileset>
		<fileset dir="${nativeroot}">
		<include name="native/*/.so" />
		</fileset>
		<zipfileset src="${lib}/sis-base/sis-base.jar">
		<include name="ch/systemsx/cisd/base/utilities/BuildAndEnvironmentInfo.class" />
		</zipfileset>
		<manifest>
		<attribute name="Main-Class"
		value="ch.systemsx.cisd.base.utilities.BuildAndEnvironmentInfo" />
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		</manifest>
		</jar>
		</target>

		<target name="jar-macosx-intel" depends="compile">
		<delete dir="${native}" />
		<mkdir dir="${native}" />
		<mkdir dir="${dist.hdf5.lib}" />
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<copy todir="${native}">
		<fileset dir="${nativesrc}">
		<include name="jhdf5/i386-Mac OS X/libjhdf5.jnilib" />
		<include name="jhdf5/x86_64-Mac OS X/libjhdf5.jnilib" />
		</fileset>
		</copy>
		<jar destfile="${dist}/hdf5-macosx-intel.jar">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		</fileset>
		<fileset dir="${nativeroot}">
		<include name="native/*/.jnilib" />
		</fileset>
		<zipfileset src="${lib}/sis-base/sis-base.jar">
		<include name="ch/systemsx/cisd/base/utilities/BuildAndEnvironmentInfo.class" />
		</zipfileset>
		<manifest>
		<attribute name="Main-Class"
		value="ch.systemsx.cisd.base.utilities.BuildAndEnvironmentInfo" />
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		</manifest>
		</jar>
		</target>

		<target name="jar-windows-intel" depends="compile">
		<delete dir="${native}" />
		<mkdir dir="${native}" />
		<mkdir dir="${dist.hdf5.lib}" />
		<build-info revision="revision.number" version="version.number" clean="clean.flag" />
		<echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo>
		<copy todir="${native}">
		<fileset dir="${nativesrc}">
		<include name="jhdf5/x86-Windows/jhdf5.dll" />
		<include name="jhdf5/amd64-Windows/jhdf5.dll" />
		</fileset>
		</copy>
		<jar destfile="${dist}/hdf5-windows-intel.jar">
		<fileset dir="${classes}">
		<include name="${build.info.filename}" />
		</fileset>
		<fileset dir="${nativeroot}">
		<include name="native/*/.dll" />
		</fileset>
		<zipfileset src="${lib}/sis-base/sis-base.jar">
		<include name="ch/systemsx/cisd/base/utilities/BuildAndEnvironmentInfo.class" />
		</zipfileset>
		<manifest>
		<attribute name="Main-Class"
		value="ch.systemsx.cisd.base.utilities.BuildAndEnvironmentInfo" />
		<attribute name="Version" value="${version.number}" />
		<attribute name="Build-Number"
		value="${version.number} (r${revision.number},${clean.flag})" />
		</manifest>
		</jar>
		</target>

		<target name="doc">
		<delete dir="${targets}/doc" />
		<delete dir="${targets}/source-base" />
		<unzip src="../libraries/sis-base/sis-base-src.zip" dest="${targets}/source-base" />
		<javadoc classpath="../base/targets/classes:../libraries/sis-base/sis-base.jar:../libraries/commons-lang/commons-lang.jar:../libraries/commons-io/commons-io.jar:../libraries/restrictionchecker/restrictions.jar:../libraries/cisd-args4j/cisd-args4j.jar"
		destdir="targets/doc"
		doctitle="JHDF5 14.12"
		author="false"
		overview="overview.html"
		access="public">
		<fileset dir="source/java" defaultexcludes="yes">
		<include name="ch/systemsx/cisd/hdf5/*/.java" />
		<include name="ncsa/hdf/hdf5lib/exceptions/*/.java" />
		<exclude name="ch/systemsx/cisd/hdf5/hdf5lib/*/.java" />
		<exclude name="ch/systemsx/cisd/hdf5/cleanup/*/.java" />
		<exclude name="ch/systemsx/cisd/hdf5/MatrixUtils.java" />
		<exclude name="ch/systemsx/cisd/hdf5/StringUtils.java" />
		<exclude name="ch/systemsx/cisd/hdf5/ReflectionUtils.java" />
		<exclude name="ch/systemsx/cisd/hdf5/BitSetConversionUtils.java" />
		</fileset>
		<fileset dir="${targets}/source-base" defaultexcludes="yes">
		<include name="ch/systemsx/cisd/base/mdarray/*/.java" />
		</fileset>
		</javadoc>
		<copy todir="${targets}/doc">
		<fileset dir="${sources.examples}" />
		</copy>
		<copy file="${original.dist}/doc/JHDF5.pdf" todir="${targets}/doc" />
		</target>

		<target name="dist" depends="clean, jar-all, doc">
		<zip destfile="${javadoc.zip.file}" basedir="${targets}" includes="doc/**" />
		<delete dir="${dist}/${mainfolder}" />
		<copy file="${lib}/cisd-args4j/cisd-args4j.jar" todir="${dist}/${distfolder}/lib" />
		<copy file="${lib}/sis-base/sis-base.jar" todir="${dist}/${distfolder}/lib" />
		<copy file="${lib}/commons-lang/commons-lang.jar" todir="${dist}/${distfolder}/lib" />
		<copy file="${lib}/commons-io/commons-io.jar" todir="${dist}/${distfolder}/lib" />
		<move file="${jar.batteries-included.file}"
		todir="${dist}/${distfolder}/lib/batteries_included" />
		<move file="${dist}/hdf5-linux-intel.jar" todir="${dist}/${distfolder}/lib/nativejar" />
		<move file="${dist}/hdf5-macosx-intel.jar" todir="${dist}/${distfolder}/lib/nativejar" />
		<move file="${dist}/hdf5-windows-intel.jar" todir="${dist}/${distfolder}/lib/nativejar" />
		<move todir="${dist}/${distfolder}/lib">
		<fileset dir="${dist}">
		<include name="*.jar" />
		</fileset>
		</move>
		<unzip src="${dist}/${distfolder}/lib/batteries_included/${jar.batteries-included.filename}"
		dest="${dist}/${distfolder}/lib">
		<patternset>
		<include name="native/**" />
		</patternset>
		</unzip>
		<move file="${src.zip.file}" todir="${dist}/${distfolder}/src" />
		<move file="${javadoc.zip.file}" todir="${dist}/${distfolder}/doc" />
		<move file="${examples.src.zip.file}" todir="${dist}/${distfolder}/doc" />
		<copy todir="${dist}/${distfolder}">
		<fileset dir="${original.dist}" />
		</copy>
		<zip destfile="${dist.file}-${version.number}-r${revision.number}.zip">
		<zipfileset dir="${dist}/${distfolder}" prefix="${mainfolder}" excludes="*/.sh" />
		<zipfileset dir="${dist}/${distfolder}"
		prefix="${mainfolder}"
		includes="*/.sh"
		filemode="755" />
		</zip>
		<delete dir="${dist}/${distfolder}" />
		</target>

		<!--
		// Task for continuous integration server.
		-->
		<target name="ci"
		depends="build-common.ci, check-dependencies"
		description="Task for continuous integration server." />

		</project>

dist/CONTENT

+9 −6

Original line number	Diff line number	Diff line
		@@ -42,13 +42,16 @@ Source Code:
		The source code of the Apache "Commons Lang3" library.

		Libraries:
		lib/sis-jhdf5.jar:
		The Java class files of the JHDF5 library, the h5ar archiver and the hdf5 native libraries.
		Requires commons-io-2.6.jar, commons-lang3-3.7.jar, sis-base-18.08.0.jar and cisd-args4j-9.11.2
		(only needed for h5ar archiver) on the class path.
		lib/sis-base-18.08.0.jar
		The Java class files of the SIS base library. Requires commons-io-2.6.jar, commons-lang3-3.7.jar
		lib/sis-jhdf5-<VERSION>.jar:
		The Java class files of the JHDF5 library and the hdf5 native libraries.
		Requires commons-io-2.6.jar, commons-lang3-3.7.jar and sis-base-18.08.0.jar on the class path.
		lib/sis-jhdf5-h5ar-cli-<VERSION>.jar:
		The Java class files of the h5ar archiver command line interface application.
		Requires sis-jhdf5-<VERSION> and all its dependencies, as well as cisd-args4j-9.11.2
		on the class path.
		lib/sis-base-18.08.0.jar
		The Java class files of the SIS base library. Requires commons-io-2.6.jar and
		commons-lang3-3.7.jar on the class path.
		lib/cisd-args4j-9.11.2.jar
		The Java class files of the CISD args4j library.
		lib/commons-lang3-3.7.jar