debian/changelog

+libsmithwaterman (0.0+git20160702.2610e25-4) unstable; urgency=medium
+
+  * Team upload
+  * Fix symbol that seems to be exported on all architectures
+  * Mark symbols that are optimized away when building with -O3
+
+ -- Graham Inggs <ginggs@debian.org>  Tue, 12 Jun 2018 19:52:49 +0000
+
 libsmithwaterman (0.0+git20160702.2610e25-3) unstable; urgency=medium
 
   * More specific symbols for mips and mipsel

debian/libsmithwaterman0.symbols

@@ -48,13 +48,13 @@ libsmithwaterman.so.0 libsmithwaterman0 #MINVER#
  _ZN20CBandedSmithWatermanD1Ev@Base 0.0+git20160702.2610e25
  _ZN20CBandedSmithWatermanD2Ev@Base 0.0+git20160702.2610e25
  (arch=!mips !mipsel)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.2610e25
- _ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_@Base 0.0+git20160702.2610e25
+ (optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_@Base 0.0+git20160702.2610e25
  _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25
  _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25
  _ZNSt6vectorI11IndelAlleleSaIS0_EED1Ev@Base 0.0+git20160702.2610e25
  _ZNSt6vectorI11IndelAlleleSaIS0_EED2Ev@Base 0.0+git20160702.2610e25
  _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE12emplace_backIJSD_EEEvDpOT_@Base 0.0+git20160702.2610e25
- _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE17_M_realloc_insertIJSD_EEEvN9__gnu_cxx17__normal_iteratorIPSD_SF_EEDpOT_@Base 0.0+git20160702.2610e25
+ (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE17_M_realloc_insertIJSD_EEEvN9__gnu_cxx17__normal_iteratorIPSD_SF_EEDpOT_@Base 0.0+git20160702.2610e25
  _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED1Ev@Base 0.0+git20160702.2610e25
  _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED2Ev@Base 0.0+git20160702.2610e25
  _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 0.0+git20160702.2610e25
@@ -63,13 +63,13 @@ libsmithwaterman.so.0 libsmithwaterman0 #MINVER#
  _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EED1Ev@Base 0.0+git20160702.2610e25
  _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EED2Ev@Base 0.0+git20160702.2610e25
  _ZNSt6vectorIfSaIfEE12emplace_backIJfEEEvDpOT_@Base 0.0+git20160702.2610e25
- _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base 0.0+git20160702.2610e25
+ (optional)_ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base 0.0+git20160702.2610e25
  _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 0.0+git20160702.2610e25
  _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 0.0+git20160702.2610e25
  _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 0.0+git20160702.2610e25
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS8_E@Base 0.0+git20160702.2610e25
- (arch=any-amd64 arm64 mips64el ppc64el hppa ia64 riscv64 sh4 sparc64 x32)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 0.0+git20160702.2610e25
- (arch=alpha armel armhf any-i386 mips mipsel s390x powerpc powerpcspe ppc64)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.2610e25
+ (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS8_E@Base 0.0+git20160702.2610e25
+ (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 0.0+git20160702.2610e25
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.2610e25
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 0.0+git20160702.2610e25
  (arch=mips mipsel)_ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base 0.0+git20160702.2610e25
  _ZeqRK11IndelAlleleS1_@Base 0.0+git20160702.2610e25