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debian/changelog
View file @ 606acdc9
libsmithwaterman (0.0+git20160702.2610e25-1) unstable; urgency=medium
* d/watch: use mode=git (remove debian/get-orig-source)
* Standards-Version: 4.1.4
* Point Vcs fields to salsa.debian.org
* d/rules: do not parse changelog
* debhelper 11
* hardening=+all
* Add symbols file
-- Andreas Tille <tille@debian.org> Wed, 11 Apr 2018 14:47:20 +0200
libsmithwaterman (0.0+20160702-3) unstable; urgency=medium
* Team upload.
......
debian/control
View file @ 606acdc9
......@@ -3,13 +3,12 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
dh-autoreconf,
Build-Depends: debhelper (>= 11~),
d-shlibs,
libdisorder-dev
Standards-Version: 4.0.0
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libsmithwaterman.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/libsmithwaterman.git
Standards-Version: 4.1.4
Vcs-Browser: https://salsa.debian.org/med-team/libsmithwaterman
Vcs-Git: https://salsa.debian.org/med-team/libsmithwaterman.git
Homepage: https://github.com/ekg/smithwaterman
Package: libsmithwaterman0
......
debian/copyright
View file @ 606acdc9
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: smithwaterman
Source: https://github.com/ekg/smithwaterman
Files-Excluded: *disorder*
.git*
Files: *
Copyright: 2000-2016 Erik Garrison <erik.garrison@gmail.com>
......
debian/get-orig-source deleted 100755 → 0
View file @ dfe0d8db
#!/bin/sh -e
COMPRESS=xz
NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
ORIGNAME=`echo $NAME | sed 's/^lib//'`
MVERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/^\([0-9\.]\+\)[+~][-0-9]\+$/\1/'`
mkdir -p ../tarballs
cd ../tarballs
# need to clean up the tarballs dir first because upstream tarball might
# contain a directory with unpredictable name
rm -rf *
git clone --quiet https://github.com/ekg/smithwaterman
cd $ORIGNAME
VERSION=${MVERSION}+`date -d @$(git show --format="%at" | head -n1) +%Y%m%d`
# for esthetical reasons set file timestamps (if git-restore-mtime is installed)
git restore-mtime || true
cd ..
TARDIR=${NAME}-${VERSION}
mv ${ORIGNAME} ${TARDIR}
rm -rf ${TARDIR}/.git*
rm -rf ${TARDIR}/*disorder*
GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -caf "$NAME"_"$VERSION".orig.tar.${COMPRESS} "${TARDIR}"
rm -rf ${TARDIR}
debian/libsmithwaterman0.symbols 0 → 100644
View file @ 606acdc9
libsmithwaterman.so.0 libsmithwaterman0 #MINVER#
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_ZN19CSmithWatermanGotoh31EnableRepeatGapExtensionPenaltyEff@Base 0.0+git20160702.2610e25
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_ZN19CSmithWatermanGotohC2Effff@Base 0.0+git20160702.2610e25
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_ZN20CBandedSmithWaterman17Position_REF_ZEROE@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWaterman19CreateScoringMatrixEv@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWaterman19Directions_DIAGONALE@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWaterman19Position_QUERY_ZEROE@Base 0.0+git20160702.2610e25
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_ZN20CBandedSmithWaterman23FLOAT_NEGATIVE_INFINITYE@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWaterman26CorrectHomopolymerGapOrderEjj@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWaterman27EnableHomoPolymerGapPenaltyEf@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWaterman27Position_REF_AND_QUERY_ZEROE@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWaterman30Position_REF_AND_QUERO_NONZEROE@Base 0.0+git20160702.2610e25
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_ZN20CBandedSmithWatermanC1Effffj@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWatermanC2Effffj@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWatermanD1Ev@Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWatermanD2Ev@Base 0.0+git20160702.2610e25
_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.2610e25
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debian/rules
View file @ 606acdc9
......@@ -2,13 +2,10 @@
# DH_VERBOSE := 1
DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
export DEB_BUILD_MAINT_OPTIONS = hardening=+bindnow
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
%:
dh $@ --with autoreconf
dh $@ --no-parallel
override_dh_install:
dh_install
......@@ -18,7 +15,4 @@ override_dh_install:
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \
debian/tmp/usr/lib/*/$(DEBPKGNAME).so
get-orig-source:
. debian/get-orig-source
debian/tmp/usr/lib/*/*.so
debian/watch
View file @ 606acdc9
version=4
opts="mode=git,uversionmangle=s/^/0.0+/" \
opts="mode=git,pretty=0.0+git%cd.%h" \
https://github.com/ekg/smithwaterman.git HEAD