debian/changelog

+libssw (1.1-7) UNRELEASED; urgency=medium
+
+  * debian/patches/malloc: Include definition for malloc & free
+  * debian/include/simde/x86/sse.h: drop "using"
+
+ -- Michael R. Crusoe <michael.crusoe@gmail.com>  Fri, 13 Dec 2019 16:17:12 +0100
+
 libssw (1.1-6) unstable; urgency=medium
 
   * Release to unstable.

debian/include/simde/x86/sse.h

@@ -68,14 +68,8 @@
 #    endif
 #  endif
 
-#if !defined(__cplusplus)
-#  include <math.h>
-#  include <fenv.h>
-#else
-#  include <cmath>
-#  include <cfenv>
-using std::isnan;
-#endif
+#include <math.h>
+#include <fenv.h>
 
 HEDLEY_DIAGNOSTIC_PUSH
 #  if HEDLEY_HAS_WARNING("-Wfloat-equal")

debian/patches/malloc

+From: Michael R. Crusoe <michael.crusoe@gmail.com>
+Subject: Provide declarations for malloc & free
+--- libssw.orig/src/sswjni.c
++++ libssw/src/sswjni.c
+@@ -1,6 +1,7 @@
+ #include <jni.h>
+ #include <stdio.h>
+ #include "ssw.h"
++#include <stdlib.h>
+ 
+ jstring s_align_cigar_to_jstring(JNIEnv* env, s_align* align) {
+ 	jstring jstrBuf = NULL;

debian/patches/series

@@ -2,3 +2,4 @@ build_all_libs.patch
 hardening.patch
 rename_tool.patch
 simde.patch
+malloc