debian/changelog

+libtabixpp (1.1.0-3) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * debian/libtabixpp0.symbols: Build-Depends-Package: libtabixpp-dev
+
+ -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 21 Dec 2019 14:02:53 -0700
+
+libtabixpp (1.1.0-2) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper-compat 12
+
+ -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 21 Dec 2019 13:59:27 -0700
+
 libtabixpp (1.1.0-1) unstable; urgency=medium
 
   * Team upload.

debian/compat

-11

debian/control

@@ -4,12 +4,12 @@ Uploaders: Andreas Tille <tille@debian.org>,
            Sascha Steinbiss <satta@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                libhts-dev,
                zlib1g-dev,
                libbz2-dev,
                d-shlibs
-Standards-Version: 4.2.1
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/libtabixpp
 Vcs-Git: https://salsa.debian.org/med-team/libtabixpp.git
 Homepage: https://github.com/ekg/tabixpp

debian/libtabixpp0.symbols

 libtabixpp.so.0 libtabixpp0 #MINVER#
+* Build-Depends-Package: libtabixpp-dev
  _ZN5Tabix11getNextLineERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.0.0
  _ZN5Tabix13getKstringPtrEv@Base 1.1.0
  _ZN5Tabix13getNextLineKSEv@Base 1.1.0

tabix.hpp

-#include <string>
-#include <stdlib.h>
-#include <sys/stat.h>
-#include "htslib/bgzf.h"
-#include "htslib/tbx.h"
-#include "htslib/kseq.h"
-#include <iostream>
-#include <cstring>
-#include <vector>
-
-
-using namespace std;
-
-class Tabix {
-
-    htsFile* fn;
-    tbx_t* tbx;
-    kstring_t str;
-    hts_itr_t* iter;
-    const tbx_conf_t *idxconf;
-    int tid, beg, end;
-    string firstline;
-    bool has_jumped;
-    vector<string>::iterator current_chrom;
-
-public:
-    string filename;
-    vector<string> chroms;
-
-    Tabix(void);
-    Tabix(string& file);
-    ~Tabix(void);
-
-    const kstring_t * getKstringPtr();
-    void getHeader(string& header);
-    bool setRegion(string& region);
-    bool getNextLine(string& line);
-    bool getNextLineKS();
-
-};