Try initial packaging

libucsc (0.0+git20180518.91029f67+dfsg-1) UNRELEASED; urgency=medium

  * Initial release (Closes: #xxxxxx)

 -- Andreas Tille <tille@debian.org>  Tue, 05 Jul 2016 15:09:25 +0200

11

Source: libucsc

Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Uploaders: Andreas Tille <tille@debian.org>

Section: science

Priority: optional

Build-Depends: debhelper (>= 11~)

Standards-Version: 4.1.4

Vcs-Browser: https://salsa.debian.org/med-team/libucsc

Vcs-Git: https://salsa.debian.org/med-team/libucsc.git

Homepage: http://genome.ucsc.edu/

Package: libucsc0

Architecture: any

Depends: ${shlibs:Depends},

         ${misc:Depends}

Description: library used in ucsc genome browser

 The UCSC Genome Browser was originally a graphical viewing tool for the

 human genome assembly. Later a broad collection of vertebrate and model

 organism assemblies and annotations, along with a large suite of tools

 for viewing, analyzing and downloading data was included.

 .

 While the code for the whole UCSC Genome Browser project is not DFSG

 free the basic library has a free license.  This package provides the

 free library part of the UCSC Genome Browser which is used in several

 other free software projects.

 .

 This package provides the dynamic library.

Package: libucsc-dev

Architecture: any

Depends: ${shlibs:Depends},

         ${misc:Depends}

Description: library used in ucsc genome browser (development files)

 The UCSC Genome Browser was originally a graphical viewing tool for the

 human genome assembly. Later a broad collection of vertebrate and model

 organism assemblies and annotations, along with a large suite of tools

 for viewing, analyzing and downloading data was included.

 .

 While the code for the whole UCSC Genome Browser project is not DFSG

 free the basic library has a free license.  This package provides the

 free library part of the UCSC Genome Browser which is used in several

 other free software projects.

 .

 This package provides the static library and headers.

Package: libucsc-utils

Architecture: any

Depends: ${shlibs:Depends},

         ${misc:Depends}

Description: library used in ucsc genome browser (assembly of tools)

 The UCSC Genome Browser was originally a graphical viewing tool for the

 human genome assembly. Later a broad collection of vertebrate and model

 organism assemblies and annotations, along with a large suite of tools

 for viewing, analyzing and downloading data was included.

 .

 While the code for the whole UCSC Genome Browser project is not DFSG

 free the basic library has a free license.  This package provides the

 free library part of the UCSC Genome Browser which is used in several

 other free software projects.

 .

 This package contains some free utilities using the UCSC Genome Browser

 library.

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

Upstream-Name: ucsc

Upstream-Contact: Jim Kent <jim_kent@pacbell.net>

Source: git://genome-source.soe.ucsc.edu/kent.git

        https://github.com/ucscGenomeBrowser/kent

Files-Excluded:

    build

    confs

    java

    python

    .gitignore

    LICENSE

    README

    src/a*

    src/b*

    src/c*

    src/d*

    src/f*

    src/g*

    src/h*

    src/idbQuery

    src/index

    src/intronerator

    src/isPcr

    src/j*

    src/k*

    src/m*

    src/o*

    src/p*

    src/r*

    src/s*

    src/userApps

    src/t*

    src/w*

    src/x*

    src/LICENSE

    src/README

Comment:  The LICENSE file in the root dir says:

 LICENSE files in subdirectories override the text of this LICENSE file.

Files: *

Copyright: 2001-2018 Jim Kent <jim_kent@pacbell.net>, UC Regents

License: MIT

 Permission is hereby granted, free of charge, to any person obtaining a copy of

 this software and associated documentation files (the "Software"), to deal in

 the Software without restriction, including without limitation the rights to

 use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of

 the Software, and to permit persons to whom the Software is furnished to do so,

 subject to the following conditions:

 .

 The above copyright notice and this permission notice shall be included in all

 copies or substantial portions of the Software.

 .

 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR

 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS

 FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR

 COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER

 IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN

 CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Files: lib/font/*

Copyright: 1984-1989, 1994 Adobe Systems Incorporated.,

           1988, 1994 Digital Equipment Corporation.

License: Adobe

 Adobe is a trademark of Adobe Systems Incorporated which may be

 registered in certain jurisdictions.

 Permission to use these trademarks is hereby granted only in

 association with the images described in this file.

 .

 Permission to use, copy, modify, distribute and sell this software

 and its documentation for any purpose and without fee is hereby

 granted, provided that the above copyright notices appear in all

 copies and that both those copyright notices and this permission

 notice appear in supporting documentation, and that the names of

 Adobe Systems and Digital Equipment Corporation not be used in

 advertising or publicity pertaining to distribution of the software

 without specific, written prior permission.  Adobe Systems and

 Digital Equipment Corporation make no representations about the

 suitability of this software for any purpose.  It is provided "as

 is" without express or implied warranty.

Comment:

 lib/font/README says:

 -------------------------------------------

   Most of these files were created from fonts in the xfree package.  These were downloaded from the

   CVS archive at  http://www.xfree86.org/cvs/  in the xc/fonts/bdf/100dpi  and xc/fonts/bdf/75dpi

   modules using the bdfToGem format Hiram Clawson wrote.  The commands in particular are:

   .

   bdfToGem 75dpi/courR12.bdf mgCourier12.c -name=Courier12

   bdfToGem 75dpi/courR18.bdf mgCourier18.c -name=Courier18

   bdfToGem 75dpi/courR24.bdf mgCourier24.c -name=Courier24

   bdfToGem 75dpi/helvR08.bdf mgHelvetica8.c -name=Helvetica8

   bdfToGem 75dpi/helvR12.bdf mgHelvetica12.c -name=Helvetica12

   bdfToGem 75dpi/helvR14.bdf mgHelvetica14.c -name=Helvetica14

   bdfToGem 75dpi/helvR18.bdf mgHelvetica18.c -name=Helvetica18

   bdfToGem 75dpi/helvR24.bdf mgHelvetica24.c -name=Helvetica24

   bdfToGem 75dpi/timR08.bdf mgTimes8.c -name=Times8

   bdfToGem 75dpi/timR12.bdf mgTimes12.c -name=Times12

   bdfToGem 75dpi/timR14.bdf mgTimes14.c -name=Times14

   bdfToGem 75dpi/timR18.bdf mgTimes18.c -name=Times18

   bdfToGem 75dpi/timR24.bdf mgTimes24.c -name=Times24

   bdfToGem 100dpi/courR24.bdf mgCourier34.c -name=Courier34

   bdfToGem 100dpi/helvR24.bdf mgHelvetica34.c -name=Helvetica34

   bdfToGem 100dpi/helvB24.bdf mgHelveticaBold34.c -name=HelveticaBold34

   bdfToGem 100dpi/timR24.bdf mgTimes34.c -name=Times34

 --------------------------------------------

 .

 The license statement above was verified at

    http://cvsweb.xfree86.org/cvsweb/xc/fonts/bdf/100dpi/courR24.bdf?rev=1.3&content-type=text/vnd.viewcvs-markup

Files: lib/font/mgSail8.c

Copyright: 2011 LatinoType Limitada <luciano@latinotype.com>

License: SILOpenFontLicense

 PREAMBLE

 .

 The goals of the Open Font License (OFL) are to stimulate worldwide

 development of collaborative font projects, to support the font creation

 efforts of academic and linguistic communities, and to provide a free

 and open framework in which fonts may be shared and improved in

 partnership with others.

 .

 The OFL allows the licensed fonts to be used, studied, modified and

 redistributed freely as long as they are not sold by themselves. The

 fonts, including any derivative works, can be bundled, embedded,

 redistributed and/or sold with any software provided that any reserved

 names are not used by derivative works. The fonts and derivatives,

 however, cannot be released under any other type of license. The

 requirement for fonts to remain under this license does not apply to any

 document created using the fonts or their derivatives.

 .

 DEFINITIONS

 .

 “Font Software” refers to the set of files released by the Copyright

 Holder(s) under this license and clearly marked as such. This may

 include source files, build scripts and documentation.

 .

 “Reserved Font Name” refers to any names specified as such after the

 copyright statement(s).

 .

 “Original Version” refers to the collection of Font Software components

 as distributed by the Copyright Holder(s).

 .

 “Modified Version” refers to any derivative made by adding to,

 deleting, or substituting—in part or in whole—any of the components of

 the Original Version, by changing formats or by porting the Font

 Software to a new environment.

 .

 “Author” refers to any designer, engineer, programmer, technical writer

 or other person who contributed to the Font Software.

 .

 PERMISSION & CONDITIONS

 .

 Permission is hereby granted, free of charge, to any person obtaining a

 copy of the Font Software, to use, study, copy, merge, embed, modify,

 redistribute, and sell modified and unmodified copies of the Font

 Software, subject to the following conditions:

 .

  1) Neither the Font Software nor any of its individual components, in

     Original or Modified Versions, may be sold by itself.

 .

  2) Original or Modified Versions of the Font Software may be bundled,

     redistributed and/or sold with any software, provided that each copy

     contains the above copyright notice and this license. These can be

     included either as stand-alone text files, human-readable headers or in

     the appropriate machine-readable metadata fields within text or binary

     files as long as those fields can be easily viewed by the user.

 .

  3) No Modified Version of the Font Software may use the Reserved Font

     Name(s) unless explicit written permission is granted by the

     corresponding Copyright Holder. This restriction only applies to the

     primary font name as presented to the users.

 .

  4) The name(s) of the Copyright Holder(s) or the Author(s) of the Font

     Software shall not be used to promote, endorse or advertise any Modified

     Version, except to acknowledge the contribution(s) of the Copyright

     Holder(s) and the Author(s) or with their explicit written permission.

 .

  5) The Font Software, modified or unmodified, in part or in whole,

     must be distributed entirely under this license, and must not be

     distributed under any other license. The requirement for fonts to remain

     under this license does not apply to any document created using the Font

     Software.

 .

 TERMINATION

 .

 This license becomes null and void if any of the above conditions are

 not met.

 .

 DISCLAIMER

 .

 THE FONT SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND,

 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF

 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF

 COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL THE

 COPYRIGHT HOLDER BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,

 INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL

 DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING

 FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM OTHER

 DEALINGS IN THE FONT SOFTWARE.  Webfont Kit

 .

 The license for this font is the SIL OFL license. This license does not

 allow us to redistribute derivative versions of the font without

 wholesale name changes inside and out of the font. Until we figure out a

 reasonable method of delivering these to you and complying with the

 license, you will have to use the Webfont Generator yourself on these,

 renaming the fonts appropriately.  Source: from other sources now lost

 in the midsts of time

Comment:  lib/font/README says:

 Two additional fonts - sail and sixhi - were from other sources now lost

 in the midsts of time.

 .

 According to some websearch this

    http://www.fontsquirrel.com/fonts/sail

 is most probably the source of the sail font

Files: lib/font/mgSixhi6.c

Copyright: unknown

License: unknown

 lib/font/README says:

 .

 Two additional fonts - sail and sixhi - were from other sources now lost

 in the midsts of time.

Comment: Websearch to find back what was lost was not successful.  It

 can be assumed thst this single file can be distributed and the package

 is non-free anyway.

Files: debian/*

Copyright: 2014-2018 Andreas Tille <tille@debian.org>

License: Apache-2.0

 You can find the full text of Apache-2.0 license at

 /usr/share/common-licenses/Apache-2.0.

#!/usr/bin/make -f

# DH_VERBOSE := 1

export LC_ALL=C.UTF-8

include /usr/share/dpkg/default.mk

# this provides:

# DEB_SOURCE: the source package name

# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)

# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision

# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch

# DEB_VERSION_UPSTREAM: the package's upstream version

# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog

# for hardening you might like to uncomment this:

# export DEB_BUILD_MAINT_OPTIONS=hardening=+all

%:

	dh $@

#get-orig-source:

#	. debian/get-orig-source