debian/changelog

-libvcflib (1.0.0~rc2+dfsg-1) UNRELEASED; urgency=medium
+libvcflib (1.0.0~rc2+dfsg-1) unstable; urgency=medium
 
   [ Steffen Moeller ]
   * Created debian/upstream/metadata for references to
@@ -9,12 +9,14 @@ libvcflib (1.0.0~rc2+dfsg-1) UNRELEASED; urgency=medium
   * debhelper 11
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.2.1
-  * Versioned Build-Depends: libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~)
+  * Versioned Build-Depends:
+       libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~)
   * Fix header file name
   * Build-Depends: libbz2-dev
   * Fix installation target dir
+  * Fix interpreter lines and add missing interpreter dependencies
 
- -- Andreas Tille <tille@debian.org>  Thu, 13 Sep 2018 16:06:09 +0200
+ -- Andreas Tille <tille@debian.org>  Thu, 13 Sep 2018 22:34:23 +0200
 
 libvcflib (1.0.0~rc1+dfsg1-6) unstable; urgency=medium
 

debian/control

@@ -69,7 +69,13 @@ Description: C++ library for parsing and manipulating VCF files (development)
 Package: libvcflib-tools
 Architecture: any
 Depends: ${shlibs:Depends},
-         ${misc:Depends}
+         ${misc:Depends},
+         python,
+         r-base-core,
+         r-cran-plyr,
+         r-cran-ggplot2,
+         r-cran-gridbase
+Suggests: r-cran-pracma
 Description: C++ library for parsing and manipulating VCF files (tools)
  The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
  intended to concisely describe reference-indexed variations between

debian/rules

@@ -28,6 +28,10 @@ override_dh_install:
 	# install pkg-config file
 	mkdir -p $(CURDIR)/debian/libvcflib-dev/usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig
 	mv libvcflib.pc $(CURDIR)/debian/libvcflib-dev/usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig
+	rm -rf debian/*/usr/lib/vcflib/bin/*.R
+	for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \
+	    sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done
 
 override_dh_fixperms:
 	dh_fixperms