debian/changelog

+libvcflib (1.0.0~rc2+dfsg-3) unstable; urgency=medium
+
+  * Move vcf2tsv and vcfkeepinfo to /usr/bin since it is needed by freebayes
+    test
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+  * Remove trailing whitespace in debian/control
+  * Override dh_dwz to do nothing
+
+ -- Andreas Tille <tille@debian.org>  Wed, 31 Jul 2019 16:12:42 +0200
+
 libvcflib (1.0.0~rc2+dfsg-2) unstable; urgency=medium
 
   * Add libfastahack to pkg-config input file

debian/compat

-11

debian/control

@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                dh-exec,
                python-markdown,
                libtabixpp-dev,
@@ -14,7 +14,7 @@ Build-Depends: debhelper (>= 11~),
                libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~),
                pkg-config,
                libipc-run3-perl
-Standards-Version: 4.2.1
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/libvcflib
 Vcs-Git: https://salsa.debian.org/med-team/libvcflib.git
 Homepage: https://github.com/ekg/vcflib

debian/libvcflib-tools.install

+binaries/vcfkeepinfo	usr/bin
+binaries/vcf2tsv	usr/bin
 binaries/*.R		usr/lib/R/site-library/vcflib
 binaries		usr/lib/vcflib
 debian/wrapper/*	usr/bin

debian/rules

@@ -16,7 +16,9 @@ override_dh_auto_build:
 	markdown_py -f README.html README.md
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	export LD_LIBRARY_PATH=$(CURDIR)/lib/:$LD_LIBRARY_PATH dh_auto_test
+endif
 
 override_dh_install:
 	dh_install
@@ -36,3 +38,6 @@ override_dh_install:
 override_dh_fixperms:
 	dh_fixperms
 	chmod -x debian/*/usr/lib/R/site-library/*/*.R
+
+override_dh_dwz:
+	echo "Do nothing here"