debian/changelog

+ltrsift (1.0.2-8) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.1.5
+  * Drop explicit debug package
+  * Fix spelling
+
+ -- Andreas Tille <tille@debian.org>  Wed, 11 Jul 2018 20:58:11 +0200
+
 ltrsift (1.0.2-7) unstable; urgency=medium
 
   * Remove -m32/-m64 for building for i386 reproducibility.

debian/compat

-9
+11

debian/control

@@ -3,13 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Sascha Steinbiss <sascha@steinbiss.name>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 9),
+Build-Depends: debhelper (>= 11~),
                libgenometools0-dev,
                libgtk2.0-dev,
                libglib2.0-dev
-Standards-Version: 3.9.7
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/ltrsift.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/ltrsift.git
+Standards-Version: 4.1.5
+Vcs-Browser: https://salsa.debian.org/med-team/ltrsift
+Vcs-Git: https://salsa.debian.org/med-team/ltrsift.git
 Homepage: http://www.zbh.uni-hamburg.de/LTRsift
 
 Package: ltrsift
@@ -29,26 +29,3 @@ Description: postprocessing and classification of LTR retrotransposons
  structure in a hierarchical fashion, allowing the user to "sift" through the
  sometimes large results of de novo prediction software. It also offers
  customizable filtering and classification functionality.
-
-Package: ltrsift-dbg
-Architecture: any
-Section: debug
-Priority: extra
-Depends: ${shlibs:Depends},
-         ${misc:Depends},
-         ltrsift (= ${binary:Version})
-Description: postprocessing and classification of LTR retrotransposons, with debug symbols
- This package contains debug information stripped from LTRsift.
- You may decide to install it to help identifying issues, typically
- to help communication with upstream developers.
-
-Package: ltrsift-examples
-Architecture: all
-Depends: ${misc:Depends}
-Suggests: ltrsift
-Description: example data for LTRsift
- This package contains test sequences (gzipped FASTA) and annotations (GFF3)
- from the Drosophila melanogaster (fruit fly) genome, to be used in an example
- process of  postprocessing and classification of newly detected LTR
- retrotransposons. Scripts for using LTRsift to encode the sequences into a
- format accepted by LTRsift are included as well.

debian/patches/series

 build_on_64bit
 use_deterministic_file_order
+spelling.patch

debian/patches/spelling.patch

+Description: Fix spelling
+Author: Andreas Tille <tille@debian.org>
+Last-Update: Wed, 11 Jul 2018 20:48:12 +0200
+
+--- a/src/menubar.c
++++ b/src/menubar.c
+@@ -1218,7 +1218,7 @@ static void help_about_activate(GT_UNUSE
+     else if (err->domain == G_FILE_ERROR)
+       g_warning("GFileError: %s\n", err->message);
+     else
+-      g_warning("An error in the domain: %d has occured!\n", err->domain);
++      g_warning("An error in the domain: %d has occurred!\n", err->domain);
+ 
+     g_error_free(err);
+   }
+--- a/src/message_strings.h
++++ b/src/message_strings.h
+@@ -147,7 +147,7 @@
+                             "version     = \"Script version here\"\n" \
+                             "email       = \"Your email here\"\n" \
+                             "short_descr = \"Short description here\"\n" \
+-                            "description = \"Script desription here\"\n\n" \
++                            "description = \"Script description here\"\n\n" \
+                             "function filter(gn)\n"\
+                             "  return true -- return false\n" \
+                             "end"

debian/rules

@@ -22,13 +22,13 @@ else
 endif
 
 %:
-	dh $@ --parallel
+	dh $@
 
 override_dh_auto_clean:
 	$(MAKE) cleanup
 
 override_dh_auto_build:
-	dh_auto_build --parallel -- x32=$(X32) 64bit=$(64BIT) errorcheck=no
+	dh_auto_build -- x32=$(X32) 64bit=$(64BIT) errorcheck=no
 
 override_dh_auto_test:
 	#dh_auto_test -- useshared=yes x32=$(X32) 64bit=$(64BIT) testthreads=5
@@ -38,8 +38,5 @@ override_dh_auto_install:
 	gzip -n -9 sample_data/dmel-2L-chromosome-r5.8.fasta
 	dh_auto_install -- 64bit=$(64BIT) errorcheck=no prefix=$(DESTDIR)/usr
 
-override_dh_strip:
-	dh_strip --dbg-package=ltrsift-dbg
-
 override_dh_installdocs:
 	dh_installdocs --exclude=license.template