Autopkgtest

fix_test_path.patch

2to3.patch

fix_src_packed_field.patch

#!/bin/bash

set -e

pkg=#PACKAGENAME#

pkg=megahit

export LC_ALL=C.UTF-8

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then

  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)

  # Double quote below to expand the temporary directory variable now versus

  # later is on purpose.

  # shellcheck disable=SC2064

  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM

fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cp -a /usr/share/doc/${pkg}/data/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

gunzip r3_1.fa.gz r3_2.fa.gz

megahit --test -t 2

MEGAHIT_NUM_MERCY_FACTOR=1.5 megahit --test -t 4 --mem-flag 0 --no-hw-accel

megahit --test -t 2 --kmin-1pass

rm -rf test-random && python3 generate_random_fasta.py > random.fa && megahit -r random.fa --k-list 255 --min-count 1 -o test-random

rm -rf test-fastg && megahit --test -t 2 --mem-flag 2 --keep-tmp-files -o test-fastg

megahit_toolkit contig2fastg 59 test-fastg/intermediate_contigs/k59.contigs.fa > 59.fastg

megahit_toolkit readstat < test-fastg/intermediate_contigs/k59.contigs.fa

#do_stuff_to_test_package#