debian/megahit.install

+obj-x86_64-linux-gnu/megahit usr/bin
+obj-x86_64-linux-gnu/megahit_core usr/bin
+obj-x86_64-linux-gnu/megahit_core_no_hw_accel usr/bin
+obj-x86_64-linux-gnu/megahit_core_popcnt usr/bin
+obj-x86_64-linux-gnu/megahit_toolkit usr/bin

debian/patches/fix_test_path.patch

+Description: for sake of autopkgtest, change test data directory
+ This now becomes the working directory.
+Author: Shayan Doust <hello@shayandoust.me>
+Last-Update: 2019-10-15
+---
+
+Index: megahit/src/megahit
+===================================================================
+--- megahit.orig/src/megahit	2019-10-15 06:06:49.207438632 +0100
++++ megahit/src/megahit	2019-10-15 06:06:49.203438593 +0100
+@@ -566,14 +566,9 @@
+ 
+ 
+ def find_test_data_path():
+-    script_path = software_info.script_path
+-    for path in [os.path.join(script_path, '..'), os.path.join(script_path, '../share/megahit')]:
+-        test_data_dir = abspath(os.path.join(path, 'test_data'))
+-        if os.path.isdir(test_data_dir) and all(
+-                f in os.listdir(test_data_dir) for f in ['r1.il.fa.gz', 'r2.il.fa.bz2', 'r3_1.fa', 'r3_2.fa', 'r4.fa']):
+-            return test_data_dir
+-    raise Usage('Test data not found! Script path = {0}'.format(script_path))
+-
++        # The test will suspend anyways if the files are not there
++        test_data_dir = '.'
++        return test_data_dir
+ 
+ def check_reads():
+     if opt.test_mode:

debian/patches/series

+fix_test_path.patch
 2to3.patch
 fix_src_packed_field.patch