Commit ce42df64 authored by Andreas Tille's avatar Andreas Tille
Browse files

New upstream version 0.0+git20180524.24e70bf

parent d6fb2d73
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@@ -23,7 +23,6 @@

    <path id="build.classpath">
        <fileset dir="../../jloda/jars"  includes="*.jar"/>
        <fileset dir="../../malt/jars"  includes="*.jar"/>
	<fileset dir="../../jloda/jars/batik-1.8"  includes="*.jar"/>

        <fileset dir="../../megan-ce/jars/megan6server"  includes="*.jar"/>
@@ -57,8 +56,15 @@
        </copy>
</target>

 <!-- copy fxml -->
    <target name="copy_fx" depends="copy_sources">
        <copy todir="${classDir}">
		<fileset dir="${meganSrcDir}" includes="**/*.fxml"/>
        </copy>
</target>

    <!-- compile  MEGAN -->
    <target name="compile" depends="copy_sources">
    <target name="compile" depends="copy_fx">
        <javac  includeantruntime="false"
                srcdir="${srcDir}"
                destdir="${classDir}"
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/*
 *  Copyright (C) 2017 Daniel H. Huson
 *  Copyright (C) 2018 Daniel H. Huson
 *
 *  (Some files contain contributions from other authors, who are then mentioned separately.)
 *
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/*
 *  Copyright (C) 2017 Daniel H. Huson
 *  Copyright (C) 2018 Daniel H. Huson
 *
 *  (Some files contain contributions from other authors, who are then mentioned separately.)
 *
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@@ -475,7 +475,7 @@
478	COG0478 Serine Threonine protein kinase
479	COG0479 succinate dehydrogenase
480	COG0480 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity)
481	COG0481 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner (By similarity)
481	COG0481 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon reverse translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner (By similarity)
482	COG0482 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (By similarity)
483	COG0483 inositol monophosphatase
484	COG0484 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity)
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created: Tue Feb 21 10:53:57 CET 2017
created: Thu Mar 22 13:23:29 SGT 2018
Cite: Benson et al (2005) NAR 33 D34–38.
 No newline at end of file
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