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Commits on Source (7)
Depends: ncbi-blast+-legacy
· 8f20a66f
Andreas Tille
authored
Dec 11, 2019
8f20a66f
routine-update: Standards-Version: 4.4.1
· edb1e293
Andreas Tille
authored
Dec 11, 2019
edb1e293
routine-update: Ready to upload to unstable
· 96d00913
Andreas Tille
authored
Dec 11, 2019
96d00913
Rename autopkgtest script
· 08660def
Andreas Tille
authored
Dec 11, 2019
08660def
R-U: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
· 76eeb849
Andreas Tille
authored
Dec 11, 2019
76eeb849
routine-update: Ready to upload to unstable
· 5b9aa08d
Andreas Tille
authored
Dec 11, 2019
5b9aa08d
Merge unintended changelog entries
· 70416946
Andreas Tille
authored
Dec 11, 2019
70416946
Show whitespace changes
Inline
Side-by-side
debian/README.test
View file @
70416946
...
...
@@ -3,7 +3,7 @@ Notes on how this package can be tested.
This
package
can
be
tested
by
executing
sh
installation
-
test
sh
run
-
unit
-
test
in
order
to
confirm
its
integrity
.
...
...
debian/changelog
View file @
70416946
metastudent (2.0.1-8) unstable; urgency=medium
* Team upload.
* Depends: ncbi-blast+-legacy
Closes: #946538
* Standards-Version: 4.4.1
* autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
-- Andreas Tille <tille@debian.org> Wed, 11 Dec 2019 10:43:44 +0100
metastudent (2.0.1-7) unstable; urgency=medium
[ Jelmer Vernooij ]
...
...
debian/control
View file @
70416946
...
...
@@ -4,12 +4,12 @@ Uploaders: Tobias Hamp <hampt@rostlab.org>,
Laszlo Kajan <lkajan@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12)
,
Build-Depends: debhelper-compat (= 12)
Build-Depends-Indep: dh-python,
python3-all,
javahelper,
default-jdk
Standards-Version: 4.4.
0
Standards-Version: 4.4.
1
Vcs-Browser: https://salsa.debian.org/med-team/metastudent
Vcs-Git: https://salsa.debian.org/med-team/metastudent.git
Homepage: https://rostlab.org/owiki/index.php/Metastudent
...
...
@@ -20,7 +20,7 @@ Depends: ${misc:Depends},
${perl:Depends},
${python3:Depends},
python3,
blast2
,
ncbi-blast+-legacy
,
default-jre,
libgo-perl (>= 0.15-3),
libipc-run-perl,
...
...
debian/docs
View file @
70416946
debian/README.test
debian/tests/
installation
-test
debian/tests/
run-unit
-test
debian/tests/control
View file @
70416946
Tests:
installation
-test
Tests:
run-unit
-test
Depends: @, @builddeps@, metastudent-data, libgo-perl
Restrictions: allow-stderr
debian/tests/
installation
-test
→
debian/tests/
run-unit
-test
View file @
70416946
...
...
@@ -6,12 +6,12 @@ set -e
pkg
=
metastudent
if
[
"
$A
DT
TMP
"
=
""
]
;
then
A
DT
TMP
=
$(
mktemp
-d
/tmp/
${
pkg
}
-test
.XXXXXX
)
trap
"rm -rf
$A
DT
TMP
"
0 INT QUIT ABRT PIPE TERM
if
[
"
$A
UTOPKGTEST_
TMP
"
=
""
]
;
then
A
UTOPKGTEST_
TMP
=
$(
mktemp
-d
/tmp/
${
pkg
}
-test
.XXXXXX
)
trap
"rm -rf
$A
UTOPKGTEST_
TMP
"
0 INT QUIT ABRT PIPE TERM
fi
cd
$A
DT
TMP
cd
$A
UTOPKGTEST_
TMP
cp
-a
/usr/share/doc/
${
pkg
}
/examples/
*
.
find
.
-type
f
-name
"*.gz"
-exec
gunzip
\{\}
\;
...
...
@@ -21,7 +21,7 @@ for lnk in `find . -type l -name "*.gz"` ; do
done
# call example from man:
metastudent
-i
test.fasta
-o
test.result.new
--temp-dir
=
$A
DT
TMP
metastudent
-i
test.fasta
-o
test.result.new
--temp-dir
=
$A
UTOPKGTEST_
TMP
[
-z
$(
cmp
-s
test.result.BPO.txt test.result.new.BPO.txt
)
]
[
-z
$(
cmp
-s
test.result.MFO.txt test.result.new.MFO.txt
)
]
[
-z
$(
cmp
-s
test.result.CCO.txt test.result.new.CCO.txt
)
]