debian/changelog

-microbiomeutil (20101212+dfsg1-2) UNRELEASED; urgency=low
+microbiomeutil (20101212+dfsg1-2) unstable; urgency=low
 
+  [ Steffen Moeller ]
   * debian/upstream/metadata:
     - Added references to registries
     - yamllint cleanliness
 
- -- Steffen Moeller <moeller@debian.org>  Thu, 14 Sep 2017 10:15:35 +0200
+  [ Andreas Tille ]
+  * Remove unneeded get-orig-source target
+  * Remove Tim Booth from Uploaders (thanks for your work, Tim)
+  * Secure URI in watch file
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.1.4
+  * hardening=+all
+
+ -- Andreas Tille <tille@debian.org>  Thu, 05 Jul 2018 12:03:11 +0200
 
 microbiomeutil (20101212+dfsg1-1) unstable; urgency=low
 

debian/compat

-9
+11

debian/control

 Source: microbiomeutil
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller@debian.org>,
-           Tim Booth <tbooth@ceh.ac.uk>,
            Andreas Tille <tille@debian.org>
 Section: science
-XS-Autobuild: no
 Priority: optional
-Build-Depends: debhelper (>= 9),
+Build-Depends: debhelper (>= 11~),
                cdbfasta,
                blast2
-Standards-Version: 3.9.6
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/microbiomeutil.git
-Vcs-Git: git://anonscm.debian.org/debian-med/microbiomeutil.git
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil
+Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git
 Homepage: http://microbiomeutil.sourceforge.net/
 
 Package: microbiomeutil

debian/patches/Makefile_make_no_NAST.patch

-Index: microbiomeutil-2010-11-02/Makefile
-===================================================================
---- microbiomeutil-2010-11-02.orig/Makefile	2010-12-02 09:55:58.332519690 +0100
-+++ microbiomeutil-2010-11-02/Makefile	2010-12-02 09:57:32.116519685 +0100
-@@ -1,5 +1,6 @@
- 
--DIRS = NAST-iEr ChimeraSlayer WigeoN RESOURCES
-+#DIRS = NAST-iEr ChimeraSlayer WigeoN RESOURCES
-+DIRS = ChimeraSlayer WigeoN RESOURCES
- 
- all clean:
- 	X=`pwd`; \
-@@ -8,7 +9,8 @@
- 
- 
- 
--test: testNast testWigeon testChimeraSlayer
-+#test: testNast testWigeon testChimeraSlayer
-+test: testWigeon testChimeraSlayer
- 
- testNast:
- 	cd NAST-iEr; make test

debian/rules

@@ -4,6 +4,8 @@
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
 pkgdata:=microbiomeutil-data
 sampledir:=$(CURDIR)/debian/$(pkgdata)/usr/share/doc/$(pkgdata)/examples
 
@@ -55,7 +57,3 @@ override_dh_fixperms :
 	dh_fixperms
 	find debian -type f -name '*.pm' -print0 | xargs -0r chmod a-x
 	find debian -type f -name 'genus_counter.pl' -print0 | xargs -0r chmod a+x
-
-get-orig-source:
-	mkdir -p ../tarballs
-	uscan --verbose --force-download --repack-compression xz --destdir ../tarballs

debian/watch

-version=3
-opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg[0-9]*//g" \
-  http://sf.net/microbiomeutil/microbiomeutil_(.*)\.tgz
+version=4
+
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg[0-9]*//g,repack,compression=xz" \
+  https://sf.net/microbiomeutil/microbiomeutil_(.*)\.tgz