debian/changelog

+microbiomeutil (20101212+dfsg1-3) unstable; urgency=medium
+
+  * chimeraslyer: Depends: ncbi-blast+-legacy
+    Closes: #946537
+  * nast-ier: Recommends: ncbi-blast+
+  * debhelper-compat 12
+  * Standards-Version: 4.4.1
+  * Secure URI in copyright format
+  * Remove trailing whitespace in debian/changelog
+  * Remove trailing whitespace in debian/control
+  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
+
+ -- Andreas Tille <tille@debian.org>  Wed, 11 Dec 2019 09:50:55 +0100
+
 microbiomeutil (20101212+dfsg1-2) unstable; urgency=low
 
   [ Steffen Moeller ]

debian/compat

-11

debian/control

@@ -4,10 +4,10 @@ Uploaders: Steffen Moeller <moeller@debian.org>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                cdbfasta,
-               blast2
-Standards-Version: 4.1.4
+               ncbi-blast+-legacy
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil
 Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git
 Homepage: http://microbiomeutil.sourceforge.net/
@@ -32,7 +32,7 @@ Architecture: all
 Depends: ${misc:Depends},
          microbiomeutil-data,
          cdbfasta,
-         blast2
+         ncbi-blast+-legacy
 Recommends: nast-ier
 Description: detects likely chimeras in PCR amplified DNA
  ChimeraSlayer is a chimeric sequence detection utility, compatible with
@@ -64,6 +64,7 @@ Depends: ${misc:Depends},
          ${shlibs:Depends},
          microbiomeutil-data,
          cdbfasta
+Recommends: ncbi-blast+
 Description: NAST-based DNA alignment tool
  The NAST-iEr alignment utility aligns a single raw nucleotide sequence
  against one or more NAST formatted sequences.

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Contact: Brian J. Haas <bhaas@broadinstitute.org>
 Source: http://microbiomeutil.sourceforge.net/
 Files-Excluded:

debian/tests/run-unit-test

 #!/bin/sh -e
 
 pkg=microbiomeutil-data
-if [ "$ADTTMP" = "" ] ; then
-  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi
-cd $ADTTMP
+cd $AUTOPKGTEST_TMP
 cp -a /usr/share/doc/${pkg}/examples/* .
 find . -name "*.gz" -exec gunzip \{\} \;
 for runtest in `find . -mindepth 1 -maxdepth 1 -type d` ; do