debian/control

@@ -29,3 +29,22 @@ Description: Performs detection and assembly of DNA insertion variants in NGS re
  tool. It can fill the gaps between a set of input contigs without any a
  priori on their relative order and orientation. It outputs the results
  in gfa file.
+
+Package: mindthegap-examples
+Architecture: all
+Depends: ${shlibs:Depends},
+	 ${misc:Depends},
+	 ${python3:Depends}
+	 mindthegap
+Description: Optional scripts and example resources for mindthegap.
+ Designed to call insertions of any size, whether they are novel or
+ duplicated, homozygous or heterozygous in the donor genome. it takes
+ as input a set of reads and a reference genome. It outputs two sets
+ of FASTA sequences: one is the set of breakpoints of detection
+ insertion sites, the other is the set of assembled insertions for
+ each breakpoint. MindTheGap can also be used as a genome assembly
+ finishing tool. It can fill the gap between a set of input contigs
+ without any a priori on their relative order and orientation. It
+ outputs the results in gfa file. Please note that this package is
+ meant to accommodate the mindthegap package and only acts as example
+ to how this package can be utilised.

debian/mindthegap-examples.install

+scripts usr/share/doc/mindthegap
+test/scripts usr/share/doc/mindthegap
+test/vde.py usr/share/doc/mindthegap
+

debian/mindthegap.install

@@ -5,7 +5,6 @@ test/references usr/share/mindthegap/test
 test/truths usr/share/mindthegap/test
 test/*.sh usr/share/mindthegap/test
 test/eval.cpp usr/share/mindthegap/test
-test/vde.py usr/share/mindthegap/test
 test/contig_test/*.fasta usr/share/mindthegap/test/contig_test
 test/contig_test/*.info.txt usr/share/mindthegap/test/contig_test
 test/contig_test/*gfa usr/share/mindthegap/test/contig_test
@@ -15,8 +14,7 @@ test/full_test/*.breakpoints usr/share/mindthegap/test/full_test
 test/full_test/*.output usr/share/mindthegap/test/full_test
 test/full_test/*.*.vcf usr/share/mindthegap/test/full_test
 data usr/share/mindthegap
-scripts usr/share/doc/mindthegap
 CHANGELOG.md usr/share/doc/mindthegap
 README.md usr/share/doc/mindthegap
-
+debian/tmp/usr/bin/MindTheGap usr/bin