debian/changelog

 mindthegap (2.2.0-1) UNRELEASED; urgency=medium
 
-  * Initial release (Closes: #<bug>)
+  * Initial release (Closes: #931826)
 
  -- Shayan Doust <hello@shayandoust.me>  Tue, 02 Jul 2019 13:41:39 +0100

debian/control

@@ -4,6 +4,8 @@ Uploaders: Shayan Doust <hello@shayandoust.me>
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 12~),
+               dh-python,
+               dh-sequence-python3,
                cmake,
                libgatbcore-dev,
                libboost-dev,
@@ -19,7 +21,7 @@ Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends},
          libgatbcore2
-Description: Performs detection and assembly of DNA insertion variants in NGS read datasets.
+Description: performs detection and assembly of DNA insertion variants in NGS read datasets
  Designed to call insertions of any size, whether they are novel or
  duplicated, homozygous or heterozygous in the donor genome. It takes as
  input a set of reads and a reference genome. It outputs two sets of
@@ -32,11 +34,10 @@ Description: Performs detection and assembly of DNA insertion variants in NGS re
 
 Package: mindthegap-examples
 Architecture: all
-Depends: ${shlibs:Depends},
-	 ${misc:Depends},
+Depends: ${misc:Depends},
 	 ${python3:Depends}
-	 mindthegap
-Description: Optional scripts and example resources for mindthegap.
+Recommends: mindthegap
+Description: optional scripts and example resources for mindthegap
  Designed to call insertions of any size, whether they are novel or
  duplicated, homozygous or heterozygous in the donor genome. it takes
  as input a set of reads and a reference genome. It outputs two sets

debian/rules

 #!/usr/bin/make -f
 
 # DH_VERBOSE := 1
-export LC_ALL=C.UTF-8
-
-include /usr/share/dpkg/default.mk
-# this provides:
-# DEB_SOURCE: the source package name
-# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
-# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
-# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
-# DEB_VERSION_UPSTREAM: the package's upstream version
-# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
-# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as
-#                    specified by <https://reproducible-builds.org/specs/source-date-epoch/>
 
 # for hardening you might like to uncomment this:
-# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
 %:
-	dh $@
-	
-	
-
-### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
-#override_dh_auto_test:
-#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-#	do_stuff_for_testing
-#endif
-
-### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script
-#get-orig-source:
-#	. debian/get-orig-source
+	dh $@ --with python3