debian/changelog

-mira (4.9.6-3) UNRELEASED; urgency=medium
+mira (4.9.6-4) unstable; urgency=medium
 
+  [ Steffen Moeller ]
   * debian/upstream/metadata: Added references to
     OMICtools and bio.tools
 
- -- Steffen Moeller <moeller@debian.org>  Fri, 21 Jul 2017 13:36:34 +0200
+  [ Andreas Tille ]
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * No extra manpages from Debian
+
+ -- Andreas Tille <tille@debian.org>  Wed, 19 Sep 2018 22:13:29 +0200
 
 mira (4.9.6-3) unstable; urgency=medium
 

debian/compat

-10
+11

debian/control

@@ -8,8 +8,7 @@ Uploaders: Charles Plessy <plessy@debian.org>,
            Michael R. Crusoe <michael.crusoe@gmail.com>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
-               dh-autoreconf,
+Build-Depends: debhelper (>= 11~),
                autoconf-archive,
                libbz2-dev,
                libexpat1-dev,
@@ -26,9 +25,9 @@ Build-Depends: debhelper (>= 10),
                libboost-iostreams-dev
 Build-Depends-Indep: docbook-xsl,
                      dblatex
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/mira.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/mira.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/mira
+Vcs-Git: https://salsa.debian.org/med-team/mira.git
 Homepage: http://chevreux.org/projects_mira.html
 
 Package: mira-assembler
@@ -36,7 +35,7 @@ Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends}
 Recommends: mira-rfam-12s-rrna
-Suggests: mira-doc,
+Suggests: mira-doc
 #         mira-examples,
 Description: Whole Genome Shotgun and EST Sequence Assembler
  The mira genome fragment assembler is a specialised assembler for
@@ -59,24 +58,11 @@ Description: Whole Genome Shotgun and EST Sequence Assembler
   * miraconvert: is a tool to convert, extract and sometimes recalculate all
     kinds of data related to sequence assembly files.
 
-#Package: mira-examples
-#Architecture: all
-#Depends: ${misc:Depends}
-#Suggests: mira-assembler,
-#          mira-doc
-#Description: files to experiment with the mira assembler
-# The mira genome fragment assembler is a specialised assembler for
-# sequencing projects classified as 'hard' due to high number of similar
-# repeats.
-# .
-# This package contains a series of files to exploit the functionality
-# of mira.
-
 Package: mira-rfam-12s-rrna
 Architecture: all
 Depends: ${misc:Depends}
-Pre-Depends: mira-assembler
 Suggests: mira-doc
+Pre-Depends: mira-assembler
 Description: extract of RFAM 12 rRNA database
  The mira genome fragment assembler is a specialised assembler for
  sequencing projects classified as 'hard' due to high number of similar

debian/mira-assembler.manpages

-debian/mans/*.1

debian/rules

@@ -11,7 +11,7 @@ exampledir=usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1/
 include /usr/share/dpkg/default.mk
 
 %:
-	dh $@ --with autoreconf --parallel
+	dh $@
 
 override_dh_auto_install-arch:
 	make install DESTDIR=$(CURDIR)/debian/$(pkg)