Autopkgtest now works

obj-x86_64-linux-gnu/src/test usr/share/doc/mmseqs2

#!/bin/bash

set -e

pkg=#PACKAGENAME#

pkg=mmseqs2

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then

  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)

  # Double quote below to expand the temporary directory variable now versus

  # later is on purpose.

  # shellcheck disable=SC2064

  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM

fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cp -r /usr/share/doc/${pkg}/test "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"/test

rm -r CMakeFiles cmake_install.cmake

gunzip *

chmod +x *

#do_stuff_to_test_package#

# Notice: Some tests have been excluded as they have user directories hard-coded.

# ... Maybe a patch soon to rectify this.

echo "Invoking test_alignment"

./test_alignment

echo "Invoking test_alignmentraceback"

./test_alignmenttraceback

echo "Invoking test_alp"

./test_alp

echo "Invoking test_backtracetranslator"

./test_backtracetranslator

echo "Invoking test_compositionbias"

./test_compositionbias

echo "Invoking test_kmergenerator"

./test_kmergenerator

echo "Invoking test_kmernucl"

./test_kmernucl

echo "Invoking test_kmerscore"

./test_kmerscore

echo "Invoking test_ksw2"

./test_ksw2

echo "Invoking test_kwaymerge"

./test_kwaymerge

echo "Invoking test_multiplealignment"

./test_multiplealignment

echo "Invoking test_profilealignment"

./test_profilealignment

echo "Invoking test_profilestates"

./test_profilestates

echo "Invoking test_pssm"

./test_pssm

echo "Invoking test_pssmprune"

./test_pssmprune

echo "Invoking test_reducematrix"

./test_reducematrix

echo "Invoking test_sequenceindex"

./test_sequenceindex

echo "Invoking test_tantan"

./test_tantan

echo "Invoking test_translate"

./test_translate

echo "Invoking test_util"

./test_util