debian/control

@@ -26,3 +26,17 @@ Description: ultra fast and sensitive protein search and clustering.
  MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it
  achieves almost the same sensitivity. It can perform profile searches
  with the same sensitivity as PSI-BLAST at over 400 times its speed.
+
+Package: mmseqs2-examples
+Architecture: all
+Depends: ${misc:Depends}
+Recommends: mmseqs2
+Description: optional resources for the mmseqs2 package
+ MMseqs2 (Many-against-Many sequence searching) is a software suite to
+ search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is
+ open source GPL-licensed software implemented in C++ for Linux, MacOS,
+ and (as beta version, via cygwim) Windows. The software is designed to
+ run on multiple cores and servers and exhibits very good scalability.
+ MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it
+ achieves almost the same sensitivity. It can perform profile searches
+ with the same sensitivity as PSI-BLAST at over 400 times its speed.

debian/mmseqs2-examples.install

+examples/* usr/share/doc/mmseqs2/example-data
+data/* usr/share/doc/mmseqs2/example-data

debian/mmseqs2.install

 obj-x86_64-linux-gnu/src/test usr/lib/mmseqs2
 util/bash-completion.sh usr/share/mmseqs2
 README.md usr/share/doc/mmseqs2
-examples/* usr/share/doc/mmseqs2/example-data
-data/* usr/share/doc/mmseqs2/example-data
+debian/missing-sources/userguide/userguide.pdf usr/share/doc/mmseqs2
+debian/tmp/usr/bin/mmseqs usr/bin

debian/source/include-binaries

+debian/missing-sources/userguide/images/cluster-mode-connectedcomp.png
+debian/missing-sources/userguide/images/kclust-supp-fig2-spc-vs-seqid.jpg
+debian/missing-sources/userguide/images/mmseqs2-sense.png
+debian/missing-sources/userguide/images/search-workflow.png
+debian/missing-sources/userguide/images/mmseqs2-prefilter.png
+debian/missing-sources/userguide/images/cluster-cascaded-clustering-workflow.png
+debian/missing-sources/userguide/images/cluster-updating-workflow.png
+debian/missing-sources/userguide/images/cluster-mode-setcover.png
+debian/missing-sources/userguide/images/taxonomy-2blca-protocol.png
+debian/missing-sources/userguide/images/mmseqs2-search.png
+debian/missing-sources/userguide/images/cluster-mode-greedyincremental.png
+debian/missing-sources/userguide/images/mmseqs2-logo.png
+debian/missing-sources/userguide/images/linclust-algorithm.png
+debian/missing-sources/userguide/images/taxonomy-2blca-protocol.pptx
+debian/missing-sources/userguide/userguide.pdf