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debian/copyright
View file @ 59d0956b
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: mmseqs2
Source: <path_to_download>
Comment: **** Before manually editing this file you should give ****
scan-copyrights
**** available in cme + lib-config-model-dpkg-perl ****
**** package a try. For existing copyright files try ****
cme update dpkg-copyright
Source: https://github.com/soedinglab/MMseqs2
Files-Excluded: lib/gzstream, lib/zstd
Comment: The system-wide option of these libraries are much preferred than that in lib/
Files: *
Copyright: 20xx-20yy <upstream>
License: <license>
Copyright: 2016 Söding Lab <https://mpibpc.mpg.de/soeding>
License: GPLv3
Files: lib/alp/*
Copyright: 2008 John Spouge
License: public_domain
Files: lib/cadode/*
Copyright: 2008 Michiaki Hamada
License: public_domain
Files: lib/kseq2/*
Copyright: 2009 Milot Mirdita
License: MIT
Files: lib/ksw2/*
Copyright: 2009 Attractive Chaos <attractor@live.co.uk>
License: MIT
Files: lib/omptl/*
Copyright: 2006-2011 Fokko Beekhof <Fokko.Beekhof@unige.ch>
License: LGPL
Files: lib/tinyexpr/*
Copyright: 2015-2018 Lewin van Winkle
License: Zlib-Libpng License
Files: debian/*
Copyright: 2019 Shayan Doust <hello@shayandoust.me>
License: <license>
License: GPLv3
License: GPLv3
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
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This program is distributed in the hope that it will be useful,
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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License: LGPL
This version of the GNU Lesser General Public License incorporates
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License: public_domain
PUBLIC DOMAIN NOTICE
National Center for Biotechnology Information
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With the exception of certain third-party files summarized below, this
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Please cite the author in any work or product based on this material.
debian/mmseqs2.install
View file @ 59d0956b
obj-x86_64-linux-gnu/src/test/* usr/share/doc/mmseqs2/test-binaries
obj-x86_64-linux-gnu/src/test usr/lib/mmseqs2
util/bash-completion.sh usr/share/mmseqs2
README.md usr/share/doc/mmseqs2
examples usr/share/doc/mmseqs2
debian/rules
View file @ 59d0956b
......@@ -9,3 +9,14 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all
%:
dh $@
override_dh_install:
dh_install
cp src/test/*.index debian/mmseqs2/usr/lib/mmseqs2/test
cp src/test/dataGap debian/mmseqs2/usr/lib/mmseqs2/test
cp src/test/dataLinear debian/mmseqs2/usr/lib/mmseqs2/test
# We also remove unneeded files & folders like CMake
rm -r debian/mmseqs2/usr/lib/mmseqs2/test/CMakeFiles \
debian/mmseqs2/usr/lib/mmseqs2/test/*.cmake \
debian/mmseqs2/usr/lib/mmseqs2/test/Makefile
debian/tests/run-unit-test
View file @ 59d0956b
......@@ -8,12 +8,9 @@ if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -r /usr/share/doc/${pkg}/test-binaries "${AUTOPKGTEST_TMP}"
cp -r /usr/lib/${pkg}/test "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"/test-binaries
rm -r CMakeFiles cmake_install.cmake
gunzip *
chmod +x *
cd "${AUTOPKGTEST_TMP}"/test
# Notice: Some tests have been excluded as they have user directories hard-coded.
# ... Maybe a patch soon to rectify this.
......