Commit 474ec7bc authored by Liubov Chuprikova's avatar Liubov Chuprikova
Browse files

Autopkgtest: improved one test, amended README.test

parent d4460962

debian/README.test

+1 −1
Original line number Diff line number Diff line
@@ -3,6 +3,6 @@ _______________________________________ 


This package can be tested by execution



	sh run-unit-test

	bash run-unit-test



in order to confirm its integrity.

debian/tests/run-unit-test

+16 −11
Original line number Diff line number Diff line
@@ -14,6 +14,13 @@ cp /usr/share/ncbi/data/autofix.prt . 
cp /usr/share/ncbi/data/UniVec.* .

gunzip *.gz



check_GI()

{

	while read GI; do

		grep -q $GI $1

	done < $2

}



##################################################################

echo '---asn2asn test---'

##################################################################
@@ -58,6 +65,15 @@ echo '---asn2gb test---' 
gbk="$(grep -c "^LOCUS " nc0225.gbk)"

[ $genes -eq $gbk ]



##################################################################

echo '---asn2idx test---'

##################################################################

/usr/bin/asn2idx -p . -x .text < nc0225.text

[ -s nc0225.idx ]

[ -s master.idx ]

awk 'NR == 1 || NR % 50 == 0 {print $1}' nc0225.idx | sed 's/\.1//' > indexed_GIs

check_GI nc0225.text indexed_GIs



##################################################################

echo '---asn2xml test---'

##################################################################
@@ -100,12 +116,6 @@ end_out="$(grep -c "<Object-id_id>${last_id}</Object-id_id>" dsRNA_viruses.xgs)" 
# _insdseqget_ and _idfetch_ testing requires internet connection.

# Comment the lines below to skip the testing.

grep 'GI:' nc0225.gbk | head | sed 's/.*GI://' > GIs.txt

check_GI()

{

	while read GI; do

		grep -q $GI $1

	done < $2

}

##################################################################

echo '---insdseqget test---'

##################################################################
@@ -130,11 +140,6 @@ last_out="$(grep ">" vecscreen.output | tail -1 | sed 's/>Vector //' | sed 's/ . 
[ $last_in==$last_out ]





echo '---asn2idx test---'

/usr/bin/asn2idx -p . -x .text < nc0225.text

[ -s nc0225.idx ]

[ -s master.idx ]



echo '---asndisc test---'

/usr/bin/asndisc -i nc0225.text -a t -o nc0225.disc

[ -s nc0225.disc ]