Commit 4ff9301c authored by Liubov Chuprikova's avatar Liubov Chuprikova
Browse files

Autopkgtest: changed test data file to smaller one

parent d4991ff8

debian/copyright

+2 −2
Original line number Diff line number Diff line
@@ -13,13 +13,13 @@ Copyright: 1998-1999 Stephane Bortzmeyer <bortzmeyer@pasteur.fr> 
           2001-2017 Aaron M. Ucko <ucko@debian.org>

License: public_domain



Files: debian/tests/test-data/nc0305.aso.gz

Files: debian/tests/test-data/nc0225.aso.gz

       debian/tests/test-data/dsRNA_viruses.ags.gz

Copyright: 1996-2018 NCBI 

License: public_domain

Comment: 

 To dowload the files use:

    wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0305.aso.gz

    wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0225.aso.gz

    wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Viruses/dsRNA_viruses.ags.gz



Files: debian/tests/test-data/trnascan-se_sample.output

debian/source/include-binaries

+1 −1
Original line number Diff line number Diff line 
debian/tests/test-data/nc0305.aso.gz

debian/tests/test-data/nc0225.aso.gz

debian/tests/test-data/dsRNA_viruses.ags.gz

debian/tests/run-unit-test

+23 −23
Original line number Diff line number Diff line
@@ -14,43 +14,43 @@ cp /usr/share/ncbi/data/autofix.prt . 
gunzip *.gz



echo '---asn2all test---'

/usr/bin/asn2all -i nc0305.aso -b -f g -o nc0305.nuc -v nc0305.prt

[ -s nc0305.nuc ]

[ -s nc0305.prt ]

/usr/bin/asn2all -i nc0225.aso -b -f g -o nc0225.nuc -v nc0225.prt

[ -s nc0225.nuc ]

[ -s nc0225.prt ]



echo '---asn2asn test---'

/usr/bin/asn2asn -i nc0305.aso -b -o nc0305.text

[ -s nc0305.text ]

/usr/bin/asn2asn -i nc0225.aso -b -o nc0225.text

[ -s nc0225.text ]



echo '---asn2fsa test---'

/usr/bin/asn2fsa -i nc0305.aso -b -a t -o nc0305.fna -v nc0305.faa

[ -s nc0305.fna ]

[ -s nc0305.faa ]

/usr/bin/asn2fsa -i nc0225.aso -b -a t -o nc0225.fna -v nc0225.faa

[ -s nc0225.fna ]

[ -s nc0225.faa ]



echo '---asn2gb test---'

/usr/bin/asn2gb -i nc0305.aso -b -a t -o nc0305.gbk

[ -s nc0305.gbk ]

/usr/bin/asn2gb -i nc0225.aso -b -a t -o nc0225.gbk

[ -s nc0225.gbk ]



echo '---asn2idx test---'

/usr/bin/asn2idx -b -p . < nc0305.aso

[ -s nc0305.idx ]

/usr/bin/asn2idx -b -p . < nc0225.aso

[ -s nc0225.idx ]

[ -s master.idx ]



echo '---asn2xml test---'

/usr/bin/asn2xml -i nc0305.aso -o nc0305.xml

[ -s nc0305.xml ]

/usr/bin/asn2xml -i nc0225.aso -o nc0225.xml

[ -s nc0225.xml ]



echo '---asndisc test---'

/usr/bin/asndisc -i nc0305.aso -b -a t -o nc0305.disc

[ -s nc0305.disc ]

/usr/bin/asndisc -i nc0225.aso -b -a t -o nc0225.disc

[ -s nc0225.disc ]



echo '---asnval test---'

/usr/bin/asnval -i nc0305.aso -b -a t -o nc0305.val

[ -f nc0305.val ]

[ ! -s nc0305.val ] # empty

/usr/bin/asnval -i nc0225.aso -b -a t -o nc0225.val

[ -f nc0225.val ]

[ ! -s nc0225.val ] # empty



echo '---asnmacro test---'

/usr/bin/asnmacro -i nc0305.aso -b -m autofix.prt -o asnmacro.output

/usr/bin/asnmacro -i nc0225.aso -b -m autofix.prt -o asnmacro.output

[ -s asnmacro.output ]



echo '---asntool test---'
@@ -58,8 +58,8 @@ echo '---asntool test---' 
[ -s asntool.output ]



echo '---cleanasn test---'

/usr/bin/cleanasn -b -a t -D t -i nc0305.aso -o nc0305_cleaned.aso

[ -s nc0305_cleaned.aso ]

/usr/bin/cleanasn -b -a t -D t -i nc0225.aso -o nc0225_cleaned.aso

[ -s nc0225_cleaned.aso ]



echo '---debruijn test---'

/usr/bin/debruijn -a ncbistdaa -n 4 > debruijn.output
@@ -69,7 +69,7 @@ echo '---gene2xml test---' 
/usr/bin/gene2xml -b -i dsRNA_viruses.ags -o dsRNA_viruses.xgs

[ -s dsRNA_viruses.xgs ]



grep 'GI:' nc0305.gbk | head | sed 's/.*GI://' > GIs.txt

grep 'GI:' nc0225.gbk | head | sed 's/.*GI://' > GIs.txt

# _insdseqget_ and _idfetch_ testing requires internet connection.

# Comment the lines below to skip the testing.

echo '---insdseqget test---'

debian/tests/test-data/nc0225.aso.gz

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+402 KiB

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debian/tests/test-data/nc0305.aso.gz

deleted100644 → 0
−1.7 MiB

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