Autopkgtest. More tests, but will be more

           2001-2017 Aaron M. Ucko <ucko@debian.org>

License: public_domain

Files: debian/tests/test-data/nc0305.aso.gz

Files: debian/tests/test-data

Copyright: 1996-2018 NCBI 

License: public_domain

Comment: GenBank Release 224.0

 To dowload the file use:

 To dowload the files use:

	wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0305.aso.gz

	wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Viruses/dsRNA_viruses.ags.gz

License: public_domain

 The NCBI toolkit has been put into the public domain, completely unfettered:

debian/tests/test-data/nc0305.aso.gz

debian/tests/test-data/dsRNA_viruses.ags.gz

cd $AUTOPKGTEST_TMP

cp /usr/share/doc/${pkg}/test-data/nc0305.aso.gz .

cp -a /usr/share/doc/${pkg}/test-data/* .

gunzip *

echo '---asn2all test---'

/usr/bin/asnval -i nc0305.aso -b -a t -o nc0305.val

[ -f nc0305.val ]

[ ! -s nc0305.val ] # empty

echo '---cleanasn test---'

/usr/bin/cleanasn -b -a t -D t -i nc0305.aso -o nc0305_cleaned.aso

[ -s nc0305_cleaned.aso ]

echo '---debruijn test---'

/usr/bin/debruijn -a ncbistdaa -n 4 > debruijn.output

[ -s debruijn.output ]

echo '---gene2xml test---'

/usr/bin/gene2xml -b -i dsRNA_viruses.ags -o dsRNA_viruses.xgs

[ -s dsRNA_viruses.xgs ]

grep 'GI:' nc0305.gbk | head | sed 's/.*GI://' > GIs.txt

# insdseqget and idfetch testing requires internet connection. Comment lines below

# to skip the testing.

echo '---insdseqget test---'

/usr/bin/insdseqget -n -i GIs.txt > insdset.xml

[ -s insdset.xml ]

echo '---idfetch test---'

/usr/bin/idfetch -G GIs.txt -t 2 -o idfetch.aso

[ -s idfetch.aso ]