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Commits on Source (4)
......@@ -7,6 +7,7 @@ libncbi6
libvibrant6b
lib*-dbg
lib*-dev
ncbi-cn3d
ncbi-data
ncbi-rrna-data
ncbi-tools-bin
......
ncbi-tools6 (6.1.20170106+dfsg1-5) experimental; urgency=medium
* Split Cn3D(-3.0) out into a new ncbi-cn3d binary package; update
debian/upstream/metadata accordingly. (Originally done in
6.1.20170106-7, but reverted in 6.1.20170106+dfsg1-1 to avoid holding
up DFSG fixes.)
* Give ncbi-cn3d a binary-specific version, missed earlier.
* Upload to experimental to clear NEW.
-- Aaron M. Ucko <ucko@debian.org> Sat, 07 Sep 2019 22:07:41 -0400
ncbi-tools6 (6.1.20170106+dfsg1-4) unstable; urgency=medium
* debian/NEWS: Rename from ncbi-data.NEWS to work around apt-listchanges
......
......@@ -82,6 +82,7 @@ Depends: libncbi6 (<< ${source:Upstream-Version}.1),
${shlibs:Depends}
Suggests: libvibrant6b,
ncbi-blast+,
ncbi-cn3d,
ncbi-tools-x11
Breaks: blast2 (<< 1:2.2.26.20160908)
Replaces: blast2 (<< 1:2.2.26.20160908)
......@@ -101,14 +102,33 @@ Depends: libncbi6 (<< ${source:Upstream-Version}.1),
libncbi6 (>= ${source:Upstream-Version}),
libvibrant6b (<< ${source:Upstream-Version}.1),
libvibrant6b (>= ${source:Upstream-Version}),
ncbi-cn3d,
${misc:Depends},
${shlibs:Depends}
Suggests: ncbi-tools-bin
Description: NCBI libraries for biology applications (X-based utilities)
This package includes some X-based utilities distributed with the
NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These
programs are not part of ncbi-tools-bin because they depend on
several additional library packages.
NCBI C SDK: Network Entrez, Sequin, ddv, and udv. These programs
are not part of ncbi-tools-bin because they depend on several
additional library packages.
Package: ncbi-cn3d
Architecture: any
Multi-Arch: foreign
Section: science
Depends: libncbi6 (<< ${source:Upstream-Version}.1),
libncbi6 (>= ${source:Upstream-Version}),
libvibrant6b (<< ${source:Upstream-Version}.1),
libvibrant6b (>= ${source:Upstream-Version}),
${misc:Depends},
${shlibs:Depends}
Suggests: ncbi-tools-bin,
ncbi-tools-x11
Breaks: ncbi-tools-x11 (<< 6.1.20170106-7~)
Replaces: ncbi-tools-x11 (<< 6.1.20170106-7~)
Description: 3-dimensional viewer for biological molecules
Cn3D is a helper application for your web browser that allows you to
view 3-dimensional structures from NCBI's Entrez retrieval service.
Package: libvibrant6b
Architecture: any
......
usr/bin/Cn3D-3.0
usr/bin/Psequin
usr/bin/ddv
usr/bin/entrez2
......
......@@ -8,8 +8,14 @@ export NCBI_VERSION_DATE =$(word 3, $(subst ., ,$(NCBI_VERSION)))
export NCBI_VERSION_DEBREL=$(word 2, $(subst -, ,$(NCBI_VERSION_FULL)))
export NCBI_VERSION_SHLIB=$(NCBI_VERSION:%+dfsg1=%)
export CN3D_VERSION=$(shell sed -ne 's/.*Version \([1-9][0-9.]*\).*/\1/p' \
cn3d/cn3dwin.c | head -n1)
export CN3D_VERSION_DATED=$(CN3D_VERSION).$(NCBI_VERSION_DATE)
export CN3D_VERSION_FULL=$(CN3D_VERSION_DATED)-$(NCBI_VERSION_DEBREL)
testversions:
env | fgrep NCBI_VERSION
env | fgrep CN3D_VERSION
# Set these here, rather than using the csh hackage that passes for an
# upstream build system. Mostly taken from ../platform/{ppc,}linux.ncbi.mk.
......@@ -187,6 +193,7 @@ override_dh_installchangelogs:
override_dh_installmenu-arch:
chmod +x debian/makemenu
debian/makemenu debian/ncbi-cn3d.install
debian/makemenu debian/ncbi-tools-x11.install
# debian/makemenu -v debian/ncbi-tools-bin.install
dh_installmenu
......@@ -206,6 +213,7 @@ override_dh_installman:
dh_link # otherwise runs too late to influence debian/installman
chmod +x debian/installman
ifneq "" "$(filter ncbi-tools-bin, $(shell dh_listpackages))"
debian/installman ncbi-cn3d
debian/installman ncbi-tools-bin
debian/installman ncbi-tools-x11
endif
......@@ -217,6 +225,10 @@ endif
override_dh_makeshlibs-arch:
dh_makeshlibs -V
override_dh_gencontrol-arch:
dh_gencontrol -pncbi-cn3d -- -v$(CN3D_VERSION_FULL)
dh_gencontrol -Nncbi-cn3d
override_dh_builddeb:
dh_builddeb -pncbi-rrna-data -- -Zxz -z7 -Sextreme
dh_builddeb -Nncbi-rrna-data
......
......@@ -13,14 +13,14 @@ Reference:
PMID: 10838572
URL: https://linkinghub.elsevier.com/retrieve/pii/S0968-0004(00)01561-9
DOI: 10.1016/S0968-0004(00)01561-9
Debian-package: ncbi-tools-x11
Debian-package: ncbi-cn3d
Registry:
- Name: OMICtools
Entry: OMICS_05052
Debian-package: ncbi-tools-x11
Debian-package: ncbi-cn3d
- Name: bio.tools
Entry: cn3d
Debian-package: ncbi-tools-x11
Debian-package: ncbi-cn3d
- Name: SciCrunch
Entry: SCR_004861
Debian-package: ncbi-tools-x11
Debian-package: ncbi-cn3d