Skip to content
Commits on Source (4)
Show whitespace changes
Inline Side-by-side
debian/changelog
View file @ 557113ec
ncbi-tools6 (6.1.20170106+dfsg1-0+deb9u1) UNRELEASED; urgency=medium
ncbi-tools6 (6.1.20170106+dfsg1-0+deb9u1) stretch; urgency=medium
* Belatedly repackage without data/UniVec.*, some portions of which
turned out to be non-free (with copyright held by Invitrogen
Corporation, which requires a license for commercial use thereof).
(NOT RELEASED YET.)
* debian/copyright: Cover previously overlooked third-party code
(all DFSG-free).
-- Aaron M. Ucko <ucko@debian.org> Sat, 03 Aug 2019 22:07:18 -0400
* debian/copyright:
- Cover previously overlooked third-party code (all DFSG-free).
- Update authors and dates for debian/*.
- Set Files-Excluded to reflect repackaging.
* debian/rules: Introduce NCBI_VERSION_SHLIB, with +dfsg1 stripped off.
* debian/watch: Reflect usage of +dfsg1.
* make/makeshlb.unx: NCBI_VERSION -> NCBI_VERSION_SHLIB.
* Temporarily revert ncbi-cn3d splitout to expedite the above fixes.
-- Aaron M. Ucko <ucko@debian.org> Sat, 03 Aug 2019 22:12:51 -0400
ncbi-tools6 (6.1.20170106-2) unstable; urgency=medium
......
debian/copyright
View file @ 557113ec
......@@ -2,6 +2,7 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Contact: toolbox@ncbi.nlm.nih.gov
Upstream-Name: ncbi
Source: http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/
Files-Excluded: ncbi/data/UniVec.*
Files: *
Copyright: 1996-2017 NCBI
......@@ -55,7 +56,8 @@ License: GPL-2+
Files: debian/*
Copyright: 1998-1999 Stephane Bortzmeyer <bortzmeyer@pasteur.fr>
2001 Dr. Guenter Bechly <gbechly@debian.org>
2001-2017 Aaron M. Ucko <ucko@debian.org>
2001-2019 Aaron M. Ucko <ucko@debian.org>
2012-2017 Andreas Tille <tille@debian.org>
License: public_domain
License: public_domain
......
debian/rules
View file @ 557113ec
......@@ -6,6 +6,7 @@ export NCBI_VERSION_MAJOR=$(word 1, $(subst ., ,$(NCBI_VERSION)))
export NCBI_VERSION_MINOR=$(NCBI_VERSION:$(NCBI_VERSION_MAJOR).%=%)
export NCBI_VERSION_DATE =$(word 3, $(subst ., ,$(NCBI_VERSION)))
export NCBI_VERSION_DEBREL=$(word 2, $(subst -, ,$(NCBI_VERSION_FULL)))
export NCBI_VERSION_SHLIB=$(NCBI_VERSION:%+dfsg1=%)
testversions:
env | fgrep NCBI_VERSION
......@@ -120,23 +121,23 @@ hi = debian/ncbi-data/usr/share/icons/hicolor
override_dh_auto_install-arch:
install -d $(destlibdir)
install -m 644 lib/* shlib/*.so.$(NCBI_VERSION) $(destlibdir)
install -m 644 lib/* shlib/*.so.$(NCBI_VERSION_SHLIB) $(destlibdir)
for x in ncbiacc ncbiCacc netentr; do \
rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION) && \
rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION_SHLIB) && \
ln -s libncbiNacc.so.$(NCBI_VERSION_MAJOR) \
$(destlibdir)/lib$$x.so.$(NCBI_VERSION_MAJOR) && \
ln -s libncbiNacc.so $(destlibdir)/lib$$x.so; \
done
for x in ncbicn3d vibrant; do \
rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION) && \
rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION_SHLIB) && \
ln -s lib$${x}OGL.so.$(NCBI_VERSION_MAJOR) \
$(destlibdir)/lib$$x.so.$(NCBI_VERSION_MAJOR) && \
ln -s lib$${x}OGL.so $(destlibdir)/lib$$x.so; \
done
rm -f $(destlibdir)/libregexp.*
cd $(destlibdir) && \
for f in *.so.$(NCBI_VERSION); do \
base=`basename $$f .so.$(NCBI_VERSION)` && \
for f in *.so.$(NCBI_VERSION_SHLIB); do \
base=`basename $$f .so.$(NCBI_VERSION_SHLIB)` && \
ln -s $$f $$base.so.$(NCBI_VERSION_MAJOR) && \
ln -s $$f $$base.so; \
done
......
debian/watch
View file @ 557113ec
version=4
opts="passive,uversionmangle=s|^|6.1.|,downloadurlmangle=s/$/ncbi.tar.gz/" \
opts="passive,uversionmangle=s|^|6.1.|,downloadurlmangle=s/$/ncbi.tar.gz/,dversionmangle=s/\+dfsg1//,repacksuffix=+dfsg1" \
http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/ (\d{8}[a-z]*)/
\ No newline at end of file
make/makeshlb.unx
View file @ 557113ec
......@@ -20,7 +20,7 @@ SH2 = `lorder *.o | tsort` $(NCBI_OTHERLIBS)
$(SH1) $@ $(SH2)
rm -f *.o __*
so=so.$(NCBI_VERSION_MAJOR).$(NCBI_VERSION_MINOR)
so=so.$(NCBI_VERSION_SHLIB)
%.$(so): %.a
$(CC) -shared -Wl,-soname=$*.so.$(NCBI_VERSION_MAJOR) -o $@ \
......