.gitignore

+bin
+build
+include
+lib
+shlib
+*-stamp

access/ent2api.c

@@ -1273,7 +1273,7 @@ NLM_EXTERN CONN EntrezOpenConnection (
     *arg = '\0';
 
   return QUERY_OpenServiceQueryEx
-    (StringHasNoText (e2_service) ? "Entrez2" : e2_service, NULL, 30, arg);
+    (StringHasNoText (e2_service) ? "Entrez2s" : e2_service, NULL, 30, arg);
 }
 
 #ifdef OS_MAC

api/sqnutil3.c

@@ -33198,7 +33198,7 @@ ClickableItemPtr LIBCALL ClickableGlobalItemCategorize (ValNodePtr list, int ite
        cip->clickable_item_type = item_type;
        cip->description 
           = (CharPtr) MemNew ( sizeof (Char) * (StringLen (fmt) + 15));
-       sprintf (cip->description, fmt);
+       strcpy (cip->description, fmt);
        return cip;
   }
   return NULL;

connect/ncbi_gnutls.c

@@ -585,6 +585,7 @@ static EIO_Status s_GnuTlsInit(FSSLPull pull, FSSLPush push)
 
     assert(!s_GnuTlsCredAnon);
 
+#if 0
     version = gnutls_check_version(0);
     if (strcasecmp(GNUTLS_VERSION, version) != 0) {
         CORE_LOGF(eLOG_Critical,
@@ -592,6 +593,7 @@ static EIO_Status s_GnuTlsInit(FSSLPull pull, FSSLPush push)
                    GNUTLS_VERSION, version));
         assert(0);
     }
+#endif
 
     val = ConnNetInfo_GetValue(0, "GNUTLS_LOGLEVEL", buf, sizeof(buf), 0);
     CORE_LOCK_READ;

connect/ncbi_http_connector.c

@@ -240,8 +240,14 @@ static int/*bool*/ x_UnsafeRedirectOK(SHttpConnector* uuu)
     if (uuu->unsafe_redir == eDefault) {
         if (!(uuu->flags & fHTTP_UnsafeRedirects)) {
             char val[32];
+            const char* dflt = NULL;
+            if (uuu->net_info->scheme == eURL_Https
+		&&  (strspn(uuu->net_info->host, "0123456789.")
+		     == strlen(uuu->net_info->host))) {
+                dflt = "TRUE";
+            }
             ConnNetInfo_GetValue(0, "HTTP_UNSAFE_REDIRECTS",
-                                 val, sizeof(val), 0);
+                                 val, sizeof(val), dflt);
             uuu->unsafe_redir = ConnNetInfo_Boolean(val) ? eOn : eOff;
         } else
             uuu->unsafe_redir = eOn;

connect/ncbi_util.c

@@ -49,7 +49,9 @@
 #  ifndef NCBI_OS_SOLARIS
 #    include <limits.h>
 #  endif /*!NCBI_OS_SOLARIS*/
-#  ifdef NCBI_OS_LINUX
+#  ifdef __MACH__
+#    include <mach/vm_param.h>
+#  elif defined(NCBI_OS_LINUX)
 #    include <sys/user.h>
 #  endif /*NCBI_OS_LINUX*/
 #  include <pwd.h>

connect/urlquery.c

@@ -128,7 +128,10 @@ NLM_EXTERN CONN QUERY_OpenUrlQuery (
   }
   if ( host_port ) {
     net_info->port = host_port;
+  } else {
+    net_info->scheme = eURL_Https;
   }
+
   StringNCpy_0 (net_info->path, host_path, sizeof (net_info->path));
   if (StringDoesHaveText (arguments)) {
     StringNCpy_0 (net_info->args, arguments, sizeof (net_info->args));

corelib/ncbimain.c

@@ -67,6 +67,7 @@
 #pragma segment NlmSegA
 #endif
 
+extern Nlm_Int2 Nlm_Main(void) __attribute__((weak));
 
 /*****************************************************************************
 *
@@ -95,7 +96,12 @@ main(int argc, char *argv[])
   /* Initialize connection library's logger, registry and lock */
   CONNECT_Init(0);
 
+  if (Nlm_Main) {
     retval = Nlm_Main();
+  } else {
+    ErrPost(0, 0, "Neither main nor Nlm_Main defined by program.");
+    retval = -1;
+  }
 
   NlmThreadJoinAll();
 

corelib/ncbitime.c

@@ -77,6 +77,7 @@
 #include <ncbi.h>
 #include <ncbithr.h>
 #include <ncbiwin.h>
+#include <stdlib.h>
 
 #ifdef OS_UNIX
 #include <sys/times.h>
@@ -108,8 +109,18 @@ NLM_EXTERN time_t LIBCALL  Nlm_GetSecs (void)
 *****************************************************************************/
 NLM_EXTERN Nlm_Boolean LIBCALL  Nlm_GetDayTime (Nlm_DayTimePtr dtp)
 {
+  /* This function honors the SOURCE_DATE_EPOCH specificatin
+     (https://reproducible-builds.org/specs/source-date-epoch/) */
+  const char *sde = getenv("SOURCE_DATE_EPOCH");
 #if (defined(SOLARIS_THREADS_AVAIL)  ||  defined(POSIX_THREADS_AVAIL)  ||  defined(WIN32)) && !defined(OS_UNIX_DARWIN)
-  time_t t = time( NULL );
+  time_t t;
+  if (sde) {
+    t = strtoul(sde, NULL, 0);
+    if (t == 0)
+      return FALSE;
+  } else {
+    t = time( NULL );
+  }
 #ifdef WIN32
   static TNlmMutex localtime_lock;
   if (NlmMutexLockEx( &localtime_lock ) != 0)
@@ -125,7 +136,13 @@ NLM_EXTERN Nlm_Boolean LIBCALL  Nlm_GetDayTime (Nlm_DayTimePtr dtp)
   time_t ltime;
   struct tm *dt;
   Nlm_MemFill ((Nlm_VoidPtr) dtp, 0, sizeof(Nlm_DayTime));
+  if (sde) {
+    ltime = strtoul(sde, NULL, 0);
+    if (ltime == 0)
+      return FALSE;
+  } else {
     time(&ltime);
+  }
   if ((dt = localtime (&ltime)) != NULL)
  	{
         Nlm_MemCopy ((Nlm_VoidPtr) dtp, (Nlm_VoidPtr) dt, sizeof (struct tm));

debian/.gitignore

+*.xpm
+*.debhelper
+*.debhelper.log
+*.substvars
+files
+libncbi6
+libvibrant6b
+lib*-dbg
+lib*-dev
+ncbi-data
+ncbi-rrna-data
+ncbi-tools-bin
+ncbi-tools-x11
+tmp

debian/.ncbirc

+[LINKS]
+CHANNELS=LINKS_FROM_MEDLINE, LINKS_FROM_SEQUENCE
+
+[SEQUENCE_CD_DESC]
+MEDIA=ENTREZ_SEQ_CD
+
+[REFERENCE_FROM_NET]
+MEDIA=ENTREZ_NET
+
+[SEQUENCE_FROM_NET]
+MEDIA=ENTREZ_NET
+
+[LINKS_FROM_NET]
+MEDIA=ENTREZ_NET
+ENTR_SEQ__ENTR_SEQ=1
+ENTR_SEQ__ENTR_REF=1
+ENTR_REF__ENTR_SEQ=1
+ENTR_REF__ENTR_REF=1
+
+[NCBI]
+DATA=/usr/share/ncbi/data/
+MEDIA=ENTREZ_NET
+AsnLoad=
+
+[ENTR_LINK]
+CHANNELS=LINKS_FROM_NET
+
+[ENTR_REF]
+CHANNELS=REFERENCE_FROM_NET
+
+[ENTR_SEQ]
+CHANNELS=SEQUENCE_FROM_NET
+
+[ENTREZ]
+SERVICES=ENTR_LINK, ENTR_REF, ENTR_SEQ
+
+[ENTREZ_NET]
+TYPE=NET
+SERVICE_NAME=Entrez
+RESOURCE_NAME=Entrez
+RESOURCE_TYPE=Entrez
+SERV_VERS_MIN=1
+SERV_VERS_MAX=0
+RES_VERS_MIN=150
+RES_VERS_MAX=0
+FORMAL_NAME=Entrez Network Service
+
+[NET_SERV]
+DISPATCHER=130.14.25.211
+DISP_ALT_1=dispatch1.nlm.nih.gov
+DISP_ALT_2=130.14.25.47
+DISP_ALT_3=dispatch2.nlm.nih.gov
+DISP_ALT_4=dispatch3.nlm.nih.gov
+DISP_ALT_5=130.14.25.1
+DISPSERIALNO=6
+DISP_USERNAME=letondal
+DISP_RECONN_ACTION=CONT
+
+[FONTS]
+JOURNAL=Helvetica,12,i
+VOLUME=Helvetica,12,b
+PAGES=Helvetica,12
+TITLE=Times,18,b
+AUTHORS=Times,18
+AFFILIATION=Times,14
+ABSTRACT=Times,14
+MESH=Times,12
+HEADING=Helvetica,14,b
+REFERENCE=Helvetica,12
+SEQUENCE=Courier,12
+STANDARD=Times,12
+DISPLAY=Courier,10
+FETCHED=Times,14
+

debian/.nlmstmanrc

+[style1]
+PPPPAAAA=AACAAAAE
+PPPPAAAC=AAGAAAADAAAAAAAB
+AAACAAAB=AAACAAPPAAPP
+AAACAAAC=AAABAB
+AAACAAAD=AAACAAAAPPAA
+AAACAAAE=AAICAAPPAAAAAAAC
+AAACAAAG=AACAAAAE
+AAADAAAG=AACAAAAF
+AAAEAAAG=AACAAAAI
+AAAHAAAG=AACAAAAJ
+AAAIAAAG=AACAAAAK
+AAAJAAAG=AACAAAAL
+AAAKAAAG=AACAAAAM
+AAAMAAAG=AACAAAAA
+AAANAAAG=AACAAAAN
+AAAOAAAG=AACAAAAO
+AAAPAAAG=AACAAAAP
+AABAAAAG=AACAAABA
+AABBAAAG=AACAAABB
+AABCAAAG=AACAAABC
+AABDAAAG=AACAAABD
+AABEAAAG=AACAAABE
+AABFAAAG=AACAAABF
+AABGAAAG=AACAAABG
+AABHAAAG=AACAAAAG
+AABKAAAG=AACAAAAH
+AABLAAAG=AACAAAAC
+AABMAAAG=AACAAABI
+AABNAAAG=AACAAABJ
+AABOAAAG=AACAAABK
+AABPAAAG=AACAAABL
+AACAAAAG=AACAAABM
+AACBAAAG=AACAAABN
+AACCAAAG=AACAAABO
+AACDAAAG=AACAAABP
+AACEAAAG=AACAAACA
+AACFAAAG=AACAAACB
+AACGAAAG=AACAAACC
+AACHAAAG=AACAAACD
+AACIAAAG=AACAAACE
+AACJAAAG=AACAAACF
+AACKAAAG=AACAAACG
+AACLAAAG=AACAAACH
+AACMAAAG=AACAAAAB
+AADBAAAG=AACAAAAF
+AADCAAAF=AACAAAAE
+AADCAAAG=AACAAAAE
+AADDAAAG=AACAAAAD
+AADEAAAG=AACAAACM
+AADFAAAG=AACAAACN
+AADGAAAG=AACAAACO
+AADHAAAG=AACAAAAC
+AADIAAAG=AACAAAAA
+AADJAAAG=AACAAACP
+AADKAAAG=AACAAADA
+AADLAAAG=AACAAADB
+AADMAAAG=AACAAADC
+AADNAAAG=AACAAADD
+AADOAAAG=AACAAADE
+AADPAAAG=AACAAADF
+AAEAAAAG=AACAAADG
+AAEBAAAG=AACAAADH
+AAECAAAG=AACAAADI
+AAEDAAAG=AACAAADJ
+AAEEAAAG=AACAAADK
+AAEFAAAG=AACAAADL
+AAEGAAAG=AACAAADM
+AAEHAAAG=AACAAADN
+AAEIAAAG=AACAAAAB
+AAEKAAAG=AACAAADO
+AAELAAAG=AACAAADP
+AAEMAAAG=AACAAAEA
+AAENAAAG=AACAAAEB
+AAEOAAAG=AACAAAEC
+AAEPAAAG=AACAAAED
+AAFAAAAG=AACAAAEE
+AAFBAAAG=AACAAAEF
+AAFCAAAG=AACAAAEG
+AAFDAAAG=AACAAAEI
+AAFEAAAG=AACAAAEH
+PPPPAAAE=EACAAAACexon-intron
+AAAEAAAB=ABACAAPPAAAAAAAAAAAE
+AAAEAAAE=AAICAAPPAAAAAAAC
+PPPNAAAB=AAACAAAAPPPP
+AAADAAAE=AAICAAAAIAAAAAAL
+AAAFAAAB=ABACAAAAIAIAAAAAAAAE
+AAAFAAAE=AAICAAPPAAAAAAAN
+AABIAAAF=AACAAAAE
+AABIAAAG=AACAAAAB
+AABJAAAG=AACAAABH
+AABLAAAF=AACAAAAE
+AADDAAAF=AACAAAAE
+AAAFAAAD=AAACAAPPAAPP
+AAALAAAG=AACAAAAD
+AAABAAAB=ABACAAAAPPPPAAAAAAAE
+AAAFAAAF=AACAAAAB
+AAAGAAAG=AACAAAAE
+AACMAAAB=ABACAAAAIAIAAAAAAAAE
+AACMAAAF=AACAAAAB
+AABAAAAB=AAECAAPPAAPPAAAAAABD
+AACKAAAB=AAECAAAAAAPPAAAAAABE
+AACLAAAB=AAECAAAAAAPPAAAAAABE
+AACPAAAB=AAECAAAAIAIAAAAAAABC
+AADBAAAB=AAECAAPPAAAAAAAAAABC
+AAEIAAAB=AAEAAAAAAABC
+AAEHAAAB=AAECAAPPAAPPAAAAAABE
+AAEHAAAE=AAACAAAAAAPP
+PPPMAAAC=AAABAB
+PPPMAAAE=AAMAAAAAAAAEAABD
+AAADAAAD=AAACAAAAIAAA
+AACMAAAD=AAECAAPPAAAAAAAAAAAC
+PPPOAAAB=AABAAC
+AAAAAAAE=AAGAAABEAAAAAAAC
+AAAGAAAE=AAIAAAAP
+PPPMAAAB=ABAAAAAAAAAG
+AAADAAAC=AAACAAAAAAPP
+PPPLAAAE=AAICAAAAIAAAAAAC
+AAABAAAE=AAIAAAAO
+PPPJAAAB=AAACAAPPAAAA
+PPPJAAAE=AAICAAPPAAAAAAAK
+PPPKAAAB=AAACAAAAAAPP
+PPPKAAAE=AAICAAAAIAAAAAAJ
+AAAAAAAB=ABAAAAAAAAAD
+AAADAAAB=ABAAAAAAAAAE
+AAAGAAAB=ABAAAAAAAAAE
+AAAHAAAB=ABAAAAAAAAAE
+AAAIAAAB=ABAAAAAAAAAE
+AAAJAAAB=ABAAAAAAAAAE
+AAAKAAAB=ABAAAAAAAAAE
+AAANAAAB=ABAAAAAAAAAE
+AAAOAAAB=ABAAAAAAAAAE
+AAAPAAAB=ABAAAAAAAAAE
+AABBAAAB=ABAAAAAAAAAE
+AABCAAAB=ABAAAAAAAAAE
+AABDAAAB=ABAAAAAAAAAE
+AABEAAAB=ABAAAAAAAAAE
+AABFAAAB=ABAAAAAAAAAE
+AABGAAAB=ABAAAAAAAAAE
+AABHAAAB=ABAAAAAAAAAE
+AABIAAAB=ABACAAPPAAPPAAAAAAAE
+AABIAAAE=AAIAAABB
+AABJAAAB=ABAAAAAAAAAE
+AABKAAAB=ABAAAAAAAAAE
+AABLAAAB=ABACAAAAPPPPAAAAAAAE
+AABLAAAE=AAIAAABB
+AABMAAAB=ABAAAAAAAAAE
+AABNAAAB=ABAAAAAAAAAE
+AABOAAAB=ABAAAAAAAAAE
+AABPAAAB=ABAAAAAAAAAE
+AACAAAAB=ABAAAAAAAAAE
+AACBAAAB=ABAAAAAAAAAE
+AACCAAAB=ABAAAAAAAAAE
+AACDAAAB=ABAAAAAAAAAE
+AACEAAAB=ABAAAAAAAAAE
+AACFAAAB=ABAAAAAAAAAE
+AACMAAAE=AAIAAAAM
+AADCAAAB=ABAAAAAAAAAE
+AADCAAAE=AAIAAABB
+AADDAAAB=ABAAAAAAAAAE
+AADDAAAE=AAIAAABB
+PPPNAAAE=AAACAAPPPPAA
+AAEKAAAB=ABAAAAAAAAAE
+AAEKAAAE=AAIAAABB
+
+[SYSTEM]
+STYLE1=style1
+styles=3
+fonts=24
+STYLE2=style2
+
+[SYSTEMFONT:2]
+name=Times Roman
+size=12
+style=0
+charset=1
+pitch=2
+family=1
+
+[SYSTEMFONT:1]
+name=Helvetica
+size=12
+style=0
+charset=1
+pitch=2
+family=2
+
+[SYSTEMFONT:3]
+name=Courier
+size=12
+style=0
+charset=1
+pitch=1
+family=3
+
+[SYSTEMFONT:4]
+name=Courier
+size=12
+style=0
+charset=1
+pitch=1
+family=3
+
+[SYSTEMFONT:7]
+name=helvetica
+size=14
+style=3
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:6]
+name=Helvetica
+size=12
+style=0
+charset=1
+pitch=2
+family=2
+
+[SYSTEMFONT:5]
+name=Courier
+size=12
+style=0
+charset=1
+pitch=1
+family=3
+
+[SYSTEMFONT:8]
+name=courier
+size=12
+style=3
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:10]
+name=Helvetica
+size=14
+style=0
+charset=1
+pitch=2
+family=2
+
+[SYSTEMFONT:9]
+name=courier
+size=14
+style=3
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:11]
+name=times
+size=10
+style=1
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:17]
+name=Courier
+size=12
+style=0
+charset=1
+pitch=1
+family=3
+
+[SYSTEMFONT:16]
+name=serif
+size=11
+style=0
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:15]
+name=helvetica
+size=10
+style=3
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:14]
+name=helvetica
+size=10
+style=2
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:13]
+name=courier
+size=10
+style=1
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:12]
+name=helvetica
+size=10
+style=1
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:18]
+name=lucida bright
+size=6
+style=0
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:19]
+name=times
+size=10
+style=0
+charset=0
+pitch=0
+family=0
+
+[style2]
+PPPMAAAE=AAMAAAAAAAAEAABI
+PPPPAAAA=AACAAAAF
+PPPPAAAC=AACAAAAF
+AAABAAAB=ABACAAIAIAIAAAAAAAAG
+AAABAAAD=AAEAAAAAAAAC
+AAABAAAE=AAIAAABG
+AAABAAAG=AACAAAAB
+AAACAAAE=AAIAAABG
+AAADAAAD=AAECAAPPAAPPAAAAAAAC
+AAADAAAE=AAIAAABG
+AAADAAAG=AACAAAAH
+AAAFAAAB=ABACAAAAPPAAAAAAAAAG
+AAAFAAAD=AAECAAAAPPAAAAAAAAAC
+AAAFAAAE=AAIAAABG
+AAAFAAAF=AACAAAAB
+AAAFAAAG=AACAAAAF
+AAAGAAAD=AAECAAAAAAPPAAAAAAAC
+AAAGAAAE=AAIAAABG
+AAAGAAAG=AACAAAAG
+AAAHAAAB=ABACAAPPAAAAAAAAAAAG
+AAAHAAAD=AAECAAPPAAAAAAAAAAAC
+AAAHAAAE=AAIAAABG
+AAAHAAAF=AACAAAAD
+AAAHAAAG=AACAAAAF
+AAAIAAAB=ABACAAPPAAAAAAAAAAAG
+AAAIAAAD=AAECAAPPAAAAAAAAAAAC
+AAAIAAAE=AAIAAABG
+AAAIAAAF=AACAAAAD
+AAAJAAAB=ABACAAPPAAAAAAAAAAAG
+AAAJAAAD=AAECAAPPAAAAAAAAAAAC
+AAAJAAAE=AAIAAABG
+AAAJAAAF=AACAAAAD
+AAAJAAAG=AACAAAAD
+AAAKAAAB=ABACAAPPAAAAAAAAAAAG
+AAAKAAAD=AAECAAPPAAAAAAAAAAAC
+AAAKAAAE=AAIAAABG
+AAAKAAAF=AACAAAAD
+AAAKAAAG=AACAAAAC
+AAALAAAE=AAIAAABG
+AAAMAAAE=AAIAAABG
+AAAMAAAG=AACAAAAA
+AAANAAAG=AACAAAAB
+AAAOAAAG=AACAAAAC
+AAAPAAAE=AAIAAABG
+AAAPAAAG=AACAAAAD
+AABAAAAE=AAIAAABG
+AABAAAAG=AACAAAAE
+AABBAAAE=AAIAAABG
+AABBAAAG=AACAAAAF
+AABCAAAG=AACAAAAG
+AABDAAAE=AAIAAABG
+AABDAAAG=AACAAAAH
+AABEAAAB=AAEAAAAAAABE
+AABEAAAG=AACAAAAI
+AABFAAAE=AAIAAABG
+AABFAAAG=AACAAAAJ
+AABGAAAE=AAIAAABG
+AABGAAAG=AACAAAAK
+AABHAAAB=AAEAAAAAAABE
+AABHAAAE=AAIAAABG
+AABHAAAG=AACAAAAL
+AABIAAAE=AAIAAABG
+AABIAAAG=AACAAAAM
+AABJAAAB=AAEAAAAAAABE
+AABJAAAE=AAIAAABG
+AABJAAAG=AACAAAAN
+AABKAAAE=AAIAAABG
+AABKAAAG=AACAAAAO
+AABLAAAE=AAIAAABG
+AABLAAAG=AACAAAAP
+AABMAAAE=AAIAAABG
+AABMAAAG=AACAAABA
+AABNAAAE=AAIAAABG
+AABNAAAG=AACAAABB
+AABOAAAE=AAIAAABG
+AABOAAAG=AACAAABC
+AABPAAAE=AAIAAABG
+AABPAAAG=AACAAABD
+AACAAAAB=AAEAAAAAAABE
+AACAAAAE=AAIAAABG
+AACAAAAG=AACAAABE
+AACBAAAE=AAIAAABG
+AACBAAAG=AACAAABF
+AACCAAAE=AAIAAABG
+AACCAAAG=AACAAABG
+AACDAAAB=ABACAAPPAAAAAAAAAAAG
+AACDAAAD=AAECAAPPAAAAAAAAAAAC
+AACDAAAE=AAIAAABG
+AACDAAAF=AACAAAAD
+AACDAAAG=AACAAAAB
+AACEAAAB=AAEAAAAAAABE
+AACEAAAE=AAIAAABG
+AACEAAAG=AACAAABH
+AACFAAAB=AAEAAAAAAABE
+AACFAAAE=AAIAAABG
+AACFAAAG=AACAAABI
+AACGAAAB=AAEAAAAAAABE
+AACGAAAE=AAIAAABG
+AACGAAAG=AACAAABJ
+AACHAAAB=AAEAAAAAAABE
+AACHAAAE=AAIAAABG
+AACHAAAG=AACAAABK
+AACIAAAE=AAIAAABG
+AACIAAAG=AACAAABL
+AACJAAAE=AAIAAABG
+AACJAAAG=AACAAABM
+AACKAAAB=AAEAAAAAAABF
+AACKAAAE=AAIAAABG
+AACKAAAG=AACAAABN
+AACLAAAB=AAEAAAAAAABE
+AACLAAAE=AAIAAABG
+AACLAAAG=AACAAABO
+AACMAAAF=AACAAAAB
+AACMAAAG=AACAAAAE
+AACNAAAE=AAIAAABG
+AACNAAAG=AACAAAAD
+AACOAAAE=AAIAAABG
+AACOAAAG=AACAAABP
+AACPAAAB=AAEAAAAAAABC
+AACPAAAE=AAIAAABG
+AACPAAAG=AACAAACA
+AADAAAAB=AAEAAAAAAABE
+AADAAAAE=AAIAAABG
+AADAAAAG=AACAAACB
+AADBAAAB=AAEAAAAAAABD
+AADBAAAE=AAIAAABG
+AADBAAAG=AACAAACC
+AADCAAAE=AAIAAABG
+AADCAAAG=AACAAACD
+AADDAAAE=AAIAAABG
+AADDAAAG=AACAAACE
+AADEAAAB=AAECAAPPAAAAAAAAAABE
+AADEAAAE=AAIAAABG
+AADEAAAG=AACAAACF
+AADFAAAE=AAIAAABG
+AADFAAAG=AACAAACG
+AADGAAAE=AAIAAABG
+AADGAAAG=AACAAACH
+AADHAAAE=AAIAAABG
+AADHAAAG=AACAAACI
+AADIAAAE=AAIAAABG
+AADIAAAG=AACAAAAA
+AADJAAAE=AAIAAABG
+AADJAAAG=AACAAACJ
+AADKAAAB=ABACAAAAIAIAAAAAAAAG
+AADKAAAD=AAACAAAAIAIA
+AADKAAAE=AAIAAABG
+AADKAAAG=AACAAACK
+AADLAAAB=AAECAAAAAAPPAAAAAABF
+AADLAAAE=AAIAAABG
+AADLAAAG=AACAAACL
+AADMAAAB=AAECAAAAAAPPAAAAAABE
+AADMAAAE=AAIAAABG
+AADMAAAG=AACAAACM
+AADNAAAE=AAIAAABG
+AADNAAAG=AACAAACN
+AADOAAAE=AAIAAABG
+AADOAAAG=AACAAACO
+AADPAAAE=AAIAAABG
+AADPAAAG=AACAAACP
+AAEAAAAE=AAIAAABG
+AAEAAAAG=AACAAADA
+AAEBAAAB=ABEAAAAAAABDAAAAAAAG
+AAEBAAAE=AAIAAABG
+AAEBAAAG=AACAAADB
+AAECAAAE=AAIAAABG
+AAECAAAG=AACAAADC
+AAEDAAAE=AAIAAABG
+AAEDAAAG=AACAAADD
+AAEEAAAE=AAIAAABG
+AAEEAAAG=AACAAADE
+AAEFAAAE=AAIAAABG
+AAEFAAAG=AACAAADF
+AAEGAAAE=AAIAAABG
+AAEGAAAG=AACAAADG
+AAEHAAAB=AAEAAAAAAABE
+AAEHAAAE=AAIAAABG
+AAEHAAAG=AACAAADH
+AAEIAAAB=AAEAAAAAAABE
+AAEIAAAE=AAIAAABG
+AAEIAAAG=AACAAADI
+AAEKAAAE=AAIAAABG
+AAEKAAAG=AACAAAAB
+AAELAAAE=AAIAAABG
+AAELAAAG=AACAAADJ
+AAEMAAAE=AAIAAABG
+AAEMAAAG=AACAAAAD
+AAENAAAE=AAIAAABG
+AAENAAAG=AACAAAAE
+AAEOAAAB=AAEAAAAAAABE
+AAEOAAAE=AAIAAABG
+AAEOAAAG=AACAAADK
+AAEPAAAE=AAIAAABG
+AAEPAAAG=AACAAADL
+AAFAAAAB=AAEAAAAAAABE
+AAFAAAAE=AAIAAABG
+AAFAAAAG=AACAAADM
+AAFBAAAE=AAIAAABG
+AAFBAAAG=AACAAADN
+AAFCAAAE=AAIAAABG
+AAFCAAAG=AACAAAAC
+AAFDAAAB=AAEAAAAAAABE
+AAFDAAAE=AAIAAABG
+AAFDAAAG=AACAAAAB
+AAFEAAAE=AAIAAABG
+AAFEAAAG=AACAAAAC
+PPPPAAAD=EACAAAAERNAs
+PPPMAAAB=ABAAAAAAAAAI
+AAAAAAAB=ABAAAAAAAAAD
+AAAAAAAE=AAGAAABOAAAAAAAC
+AAACAAAB=ABAAAAAAAAAG
+AAADAAAB=ABAAAAAAAAAG
+AAAEAAAB=ABACAAAAIAAAAAAAAAAG
+AAAGAAAB=ABAAAAAAAAAG
+AAALAAAB=ABAAAAAAAAAG
+AAAMAAAB=ABAAAAAAAAAG
+AAAPAAAB=ABAAAAAAAAAG
+AABAAAAB=AAEAAAAAAABE
+AABBAAAB=ABAAAAAAAAAG
+AABCAAAB=AAEAAAAAAABE
+AABDAAAB=ABAAAAAAAAAG
+AABFAAAB=ABAAAAAAAAAG
+AABGAAAB=ABAAAAAAAAAG
+AABIAAAB=ABACAAIAIAIAAAAAAAAG
+AABKAAAB=ABAAAAAAAAAG
+AABLAAAB=ABACAAMAMAMAAAAAAAAG
+AABMAAAB=ABAAAAAAAAAG
+AABNAAAB=ABACAAIAAAAAAAAAAAAG
+AABNAAAD=AAACAAIAAAAA
+AABOAAAB=ABAAAAAAAAAG
+AABPAAAB=ABAAAAAAAAAG
+AACBAAAB=ABACAAAAIAIAAAAAAAAG
+AACBAAAD=AAACAAAAIAIA
+AACCAAAB=ABAAAAAAAAAG
+AACIAAAB=ABAAAAAAAAAG
+AACJAAAB=ABAAAAAAAAAG
+AACMAAAB=ABAAAAAAAAAG
+AACNAAAB=ABAAAAAAAAAG
+AACNAAAF=AACAAAAB
+AACOAAAB=ABACAAAAIAIAAAAAAAAG
+AACOAAAD=AAACAAAAIAIA
+AADCAAAB=ABAAAAAAAAAG
+AADDAAAB=ABAAAAAAAAAG
+AADFAAAB=ABAAAAAAAAAG
+AADGAAAB=ABAAAAAAAAAG
+AADHAAAB=ABAAAAAAAAAG
+AADIAAAB=ABAAAAAAAAAG
+AADJAAAB=ABAAAAAAAAAG
+AADNAAAB=ABAAAAAAAAAG
+AADOAAAB=ABEAAAAAAABEAAAAAAAG
+AADPAAAB=ABAAAAAAAAAG
+AAEAAAAB=ABAAAAAAAAAG
+AAECAAAB=ABAAAAAAAAAG
+AAEDAAAB=ABAAAAAAAAAG
+AAEEAAAB=ABAAAAAAAAAG
+AAEFAAAB=ABAAAAAAAAAG
+AAEGAAAB=ABAAAAAAAAAG
+AAEKAAAB=ABACAAAAIAIAAAAAAAAG
+AAELAAAB=ABAAAAAAAAAG
+AAEMAAAB=ABECAAPPAAAAAAAAAAAAAAAAAAAE
+AAEMAAAD=AAECAAPPAAAAAAAAAAAC
+AAENAAAB=AAECAAAAAAPPAAAAAABE
+AAEPAAAB=ABAAAAAAAAAG
+AAFBAAAB=ABAAAAAAAAAG
+AAFCAAAB=ABACAAIAAAAAAAAAAAAG
+PPPJAAAE=AAIAAABH
+PPPKAAAE=AAICAAAAAAPPAABH
+PPPLAAAE=AAICAAPPAAAAAABH
+AAAEAAAE=AAIAAABH
+AAAEAAAF=AACAAAAB
+AAAEAAAG=AACAAAAC
+AAEKAAAF=AACAAAAE
+AAEMAAAF=AACAAAAF
+AAENAAAF=AACAAAAF
+AAFCAAAF=AACAAAAE
+AAFDAAAF=AACAAAAF
+AAFEAAAB=AAECAAIAAAIAAAAAAABC
+AAFEAAAF=AACAAAAF
+PPPPAAAE=EACAAAADProts
+PPPPAAAF=EACAAAACProt1
+
+[SYSTEMFONT:22]
+name=lucida bright
+size=10
+style=0
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:21]
+name=helvetica
+size=10
+style=0
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:20]
+name=helvetica
+size=12
+style=1
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:23]
+name=lucidabright
+size=10
+style=0
+charset=0
+pitch=0
+family=0
+
+[SYSTEMFONT:24]
+name=helvetica
+size=12
+style=1
+charset=0
+pitch=0
+family=0
+
+

debian/Cn3D-3.0.desktop.in

+Name=Cn3D NCBI Database Viewer
+GenericName=Database Viewer
+Comment=View NCBI databases in 3D

debian/NOTES

+X apps should pull in -lvibrant BEFORE -lvibgif to avoid problematic
+shadowing.

debian/Psequin.desktop.in

+Name=Sequin DNA Sequence Submission Tool
+GenericName=Sequence Submission Tool
+Comment=Submit DNA sequences to the GenBank, EMBL, and DDBJ databases

debian/README.test

+Notes on how this package can be tested.
+_______________________________________
+
+This package can be tested by execution
+
+	bash run-unit-test
+
+in order to confirm its integrity.

debian/TODO

+* Document sequin's options properly.
+* Split blast.1 back up, preferably semi-automatically?

debian/compat

+11