Commit 6284c402 authored by Andreas Tille's avatar Andreas Tille
Browse files

New upstream version 2.9.1+dfsg

parent 4637f4ca

CHANGES.md

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# NCBI External Developer Release:



## NCBI VDB

## NCBI VDB 2.9.1

**June 15, 2018**



  **build**: 'make install' ignore ROOT environment variable  

  **kfg, kns**: Added API to instruct VDB to silently accept any server certificate as valid.  

  **kfg, vdb-config**: name resolver service now makes use of fcgi  

  **kfg, vfs**: Fixed a bug that prevented decryption of objects encrypted with non-UTF8 text password keys  

  **klib**: added check for NULL format argument to string_printf()  

  **kns**: Randomly select from multiple proxies in configuration  

  **test**: added Windows test projects for the new schema and the latest vdb  





## NCBI VDB 2.9.0

**February 23, 2018**



  **align**: AlignAccessRefSeqEnumeratorNext no longer filters by the index

build/Makefile.clang

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@@ -47,7 +47,7 @@ LP = @ $(TOP)/build/ld.sh $(OS) $(ARCH) clang++ \ 


# tool options

WARN = -Wall -Wno-variadic-macros -Wno-long-long # -Wconversion



# TODO: Lots of new clang options in later versions (-fsanitize, CFI, CPI, ...)

ifeq (64,$(BITS))

	CARCH = -m64

else

build/Makefile.env

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@@ -330,8 +330,8 @@ DLLX ?= $(SHLX) 
ARCHDEFS = -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=$(LPFX) -DSHLIBEXT=$(DLLX)



# default tool parameters

CFLAGS	= $(DEBUG) $(DBG) $(CARCH) $(PROF) $(PED) $(DEFINES) $(ARCHDEFS) $(MIN_DEPLOY_OS_OPT) $(INCDIRS)

CPFLAGS = $(DEBUG) $(DBG) $(CARCH) $(PROF) $(DEFINES) $(ARCHDEFS) $(MIN_DEPLOY_OS_OPT) $(INCDIRS)

CFLAGS	= -std=gnu11 $(DEBUG) $(DBG) $(CARCH) $(PROF) $(PED) $(DEFINES) $(ARCHDEFS) $(MIN_DEPLOY_OS_OPT) $(INCDIRS)

CPFLAGS = -std=gnu++11 $(DEBUG) $(DBG) $(CARCH) $(PROF) $(DEFINES) $(ARCHDEFS) $(MIN_DEPLOY_OS_OPT) $(INCDIRS)

# some LDFLAGS may have been specified in $(CONFIG_FILE)

LDFLAGS += $(DBG) $(PROF) $(CARCH) $(MIN_DEPLOY_OS_OPT)

build/Makefile.gcc

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@@ -67,19 +67,15 @@ endif 


ifeq (dbg, $(BUILD))

	DBG = -g

	OPT = $(WARN)

	NOPT = $(WARN)

	OPT = $(WARN) -Wno-variadic-macros -fno-strict-aliasing -fstack-protector -Wa,--noexecstack -Wall

	NOPT = $(WARN) -Wno-variadic-macros -fno-strict-aliasing -fstack-protector -Wa,--noexecstack -Wall

	# GCC seems unable to use c99 without ansi, which

	# basically clobbers features back to c89. the options

	# must be specified in the order shown.

	PED = -std=gnu99 -pedantic # -fdiagnostics-show-option

	PED = -std=gnu11 -pedantic # -fdiagnostics-show-option

else



OPT = -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1

ifeq (x86_64, $(ARCH))

	OPT += -Wall

endif



	# TODO: use -fstack-protector-strong for gcc >= 4.9

	OPT = -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -fstack-protector -Wa,--noexecstack -Wall -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-c++11-extensions

endif



ifeq (mac,$(OS))

build/Makefile.install

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@@ -31,6 +31,10 @@ include $(CONFIG_FILE) 
#-------------------------------------------------------------------------------

# set up installation locations



# unset outside defined variables

ROOT =

LINUX_ROOT =



#fake root for debugging

#uncomment this line and change the following test for root ( see under install: ) to succeed:

#ROOT = ~/root