Verified Commit 15ea4a1f authored by Michael R. Crusoe's avatar Michael R. Crusoe 🏳️‍🌈
Browse files

Enable more architectures

parent c752ea30

debian/changelog

+13 −0
Original line number Diff line number Diff line 
ngs-sdk (2.10.0-3) unstable; urgency=medium



  * Team upload.



  [Frédéric Bonnard]

  * Add support for other architectures based on gcc atomic built-ins

   (Closes: #813559)



  [Michael R. Crusoe]

  * debian/patches/more_archs: enable arm64, mips64el, ppc64el, s390x, riscv64



 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Fri, 10 Jan 2020 11:20:47 +0100



ngs-sdk (2.10.0-2) unstable; urgency=medium



  * Drop Python2 support

debian/control

+1 −2
Original line number Diff line number Diff line
@@ -40,8 +40,7 @@ Description: Next Generation Sequencing language Bindings 
Package: libngs-sdk-dev

Architecture: any

Section: libdevel

Depends: ${shlibs:Depends},

         ${misc:Depends},

Depends: ${misc:Depends},

         libngs-sdk2 (= ${binary:Version})

Description: Next Generation Sequencing language Bindings (development)

 NGS is a new, domain-specific API for accessing reads, alignments and

debian/patches/do_not_exclude_certain_architectures_explicitly.patch

+12 −12
Original line number Diff line number Diff line
@@ -4,9 +4,9 @@ Bug-Debian: https://bugs.debian.org/813559 
Author: Andreas Tille <tille@debian.org>

Last-Update: Wed, 03 Feb 2016 07:53:29 +0100



--- a/ngs-bam/setup/konfigure.perl

+++ b/ngs-bam/setup/konfigure.perl

@@ -218,8 +218,7 @@ if ($OS eq 'linux') {

--- ngs-sdk.orig/ngs-bam/setup/konfigure.perl

+++ ngs-sdk/ngs-bam/setup/konfigure.perl

@@ -224,8 +224,7 @@

 print "checking machine architecture... " unless ($AUTORUN);

 println $MARCH unless ($AUTORUN);

 unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
@@ -16,9 +16,9 @@ Last-Update: Wed, 03 Feb 2016 07:53:29 +0100 
 }

 

 {

--- a/ngs-java/setup/konfigure.perl

+++ b/ngs-java/setup/konfigure.perl

@@ -218,8 +218,7 @@ if ($OS eq 'linux') {

--- ngs-sdk.orig/ngs-java/setup/konfigure.perl

+++ ngs-sdk/ngs-java/setup/konfigure.perl

@@ -224,8 +224,7 @@

 print "checking machine architecture... " unless ($AUTORUN);

 println $MARCH unless ($AUTORUN);

 unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
@@ -28,9 +28,9 @@ Last-Update: Wed, 03 Feb 2016 07:53:29 +0100 
 }

 

 {

--- a/ngs-python/setup/konfigure.perl

+++ b/ngs-python/setup/konfigure.perl

@@ -218,8 +218,7 @@ if ($OS eq 'linux') {

--- ngs-sdk.orig/ngs-python/setup/konfigure.perl

+++ ngs-sdk/ngs-python/setup/konfigure.perl

@@ -224,8 +224,7 @@

 print "checking machine architecture... " unless ($AUTORUN);

 println $MARCH unless ($AUTORUN);

 unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
@@ -40,9 +40,9 @@ Last-Update: Wed, 03 Feb 2016 07:53:29 +0100 
 }

 

 {

--- a/ngs-sdk/setup/konfigure.perl

+++ b/ngs-sdk/setup/konfigure.perl

@@ -218,8 +218,7 @@ if ($OS eq 'linux') {

--- ngs-sdk.orig/ngs-sdk/setup/konfigure.perl

+++ ngs-sdk/ngs-sdk/setup/konfigure.perl

@@ -224,8 +224,7 @@

 print "checking machine architecture... " unless ($AUTORUN);

 println $MARCH unless ($AUTORUN);

 unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {

debian/patches/more_archs

0 → 100644
+61 −0
Original line number Diff line number Diff line 
From: Michael R. Crusoe <michael.crusoe@gmail.com>

Subject: Enable building on more architectures

--- ngs-sdk.orig/ngs-java/setup/konfigure.perl

+++ ngs-sdk/ngs-java/setup/konfigure.perl

@@ -315,6 +315,16 @@

     $BITS = 32;

 } elsif ($MARCH =~ /ppc64/i) {

     $BITS = 64;

+} elsif ($MARCH eq 'aarch64') {

+    $BITS = 64;

+} elsif ($MARCH eq 'mips64') {

+    $BITS = 64;

+} elsif ($MARCH eq 'ppc64le') {

+    $BITS = 64;

+} elsif ($MARCH eq 's390x') {

+    $BITS = 64;

+} elsif ($MARCH eq 'riscv64') {

+    $BITS = 64;

 } else {

     die "unrecognized Architecture '$ARCH'";

 }

--- ngs-sdk.orig/ngs-sdk/setup/konfigure.perl

+++ ngs-sdk/ngs-sdk/setup/konfigure.perl

@@ -315,6 +315,16 @@

     $BITS = 32;

 } elsif ($MARCH =~ /ppc64/i) {

     $BITS = 64;

+} elsif ($MARCH eq 'aarch64') {

+    $BITS = 64;

+} elsif ($MARCH eq 'mips64') {

+    $BITS = 64;

+} elsif ($MARCH eq 'ppc64le') {

+    $BITS = 64;

+} elsif ($MARCH eq 's390x') {

+    $BITS = 64;

+} elsif ($MARCH eq 'riscv64') {

+    $BITS = 64;

 } else {

     die "unrecognized Architecture '$ARCH'";

 }

--- ngs-sdk.orig/ngs-python/setup/konfigure.perl

+++ ngs-sdk/ngs-python/setup/konfigure.perl

@@ -313,6 +313,18 @@

     $BITS = '32_64';

 } elsif ($MARCH =~ /i?86/i) {

     $BITS = 32;

+} elsif ($MARCH =~ /ppc64/i) {

+    $BITS = 64;

+} elsif ($MARCH eq 'aarch64') {

+    $BITS = 64;

+} elsif ($MARCH eq 'mips64') {

+    $BITS = 64;

+} elsif ($MARCH eq 'ppc64le') {

+    $BITS = 64;

+} elsif ($MARCH eq 's390x') {

+    $BITS = 64;

+} elsif ($MARCH eq 'riscv64') {

+    $BITS = 64;

 } else {

     die "unrecognized Architecture '$ARCH'";

 }

debian/patches/series

+1 −0
Original line number Diff line number Diff line
@@ -2,3 +2,4 @@ fix_jni.patch 
do_not_exclude_certain_architectures_explicitly.patch

fallback-on-generic-atomic32.patch

enable-ppc64el.patch

more_archs