Add shipped in example data files to test

#!/bin/bash

set -e

pkg=mcl

pkg=norsnet

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then

  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)

# Just for debugging

set -x

#Generation of protein families

mcxload -abc protein_graphs.txt --stream-mirror --stream-neg-log10 -stream-tf 'ceil(200)' -o protein_graphs.mci -write-tab protein_graphs.tab

# Run the shipped example data files

norsnet cad23.f cad23-fil.rdbProf cad23-fil.hssp cad23.norsnet cad23 cad23.profbval

mcl protein_graphs.mci -I 2

mcxdump -icl out.protein_graphs.mci.I20 -tabr protein_graphs.tab -o clusters.protein_graphs.mci.I20

#Building clusters of genomes

mcxload -abc genome_graphs.txt --stream-mirror -o genome_graphs.mci -write-tab genome_graphs.tab

mcl genome_graphs.mci -I 1.2

mcl genome_graphs.mci -I 2

mcl genome_graphs.mci -I 4

mcl genome_graphs.mci -I 6

mcxdump -icl out.genome_graphs.mci.I12 -tabr genome_graphs.tab -o clusters.genome.mci.I12

mcxdump -icl out.genome_graphs.mci.I20 -tabr genome_graphs.tab -o clusters.genome.mci.I20

mcxdump -icl out.genome_graphs.mci.I40 -tabr genome_graphs.tab -o clusters.genome.mci.I40

mcxdump -icl out.genome_graphs.mci.I60 -tabr genome_graphs.tab -o clusters.genome.mci.I60