debian/README.source

 parsinsert for Debian
 =====================
 
-Usually we try to run thge upstream test suite.  However, the upstream
-tarball is missing the file Test.cpp so we can not run this.  Upstream
-is informed and we try to deliver the package including the test suite
-in the future.
+Usually we try to run the upstream test suite.  However, the upstream
+tarball is missing the file Test.cpp so we can not run this.  Instead
+the autopkgtest command is used as build time test.
 
- -- Andreas Tille <tille@debian.org>  Thu, 27 Feb 2014 16:50:26 +0000
+ -- Andreas Tille <tille@debian.org>  Wed, 04 Dec 2019 16:26:00 +0100
 
 The files in debian/tests/test_data was retrieved sourceforge
 URL: https://sourceforge.net/projects/parsinsert/files

debian/changelog

+parsinsert (1.04-5) unstable; urgency=medium
+
+  * Run command from autopkgtest also as runtime-test to spot issues
+    for certain architectures earlier
+  * debhelper-compat 12
+  * Standards-Version: 4.4.1
+  * Secure URI in copyright format
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+  * Remove trailing whitespace in debian/changelog
+  * Use secure URI in debian/watch.
+  * Set upstream metadata fields: Archive.
+
+ -- Andreas Tille <tille@debian.org>  Wed, 04 Dec 2019 16:28:50 +0100
+
 parsinsert (1.04-4) unstable; urgency=medium
 
   * debhelper 11

debian/compat

-11

debian/control

@@ -4,8 +4,8 @@ Uploaders: Tim Booth <tbooth@ceh.ac.uk>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~)
-Standards-Version: 4.2.1
+Build-Depends: debhelper-compat (= 12)
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/parsinsert
 Vcs-Git: https://salsa.debian.org/med-team/parsinsert.git
 Homepage: http://sourceforge.net/projects/parsinsert/

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: ParsInsert
 Upstream-Contact: David Knox <david.knox@colorado.edu>
 Source: http://parsinsert.sourceforge.net

debian/rules

@@ -16,7 +16,12 @@ override_dh_auto_clean:
 	dh_auto_clean
 
 override_dh_auto_test:
-	echo "Upstream tarball lacks Test.cpp so we can not run the test."
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	cd debian/tests/test_data && \
+	$(CURDIR)/parsinsert -d0 -c80 -n1 set1000.fasta -m lanemask.txt -x rdp.taxonomy \
+		-l set1000.log -o set1000.results -t core_rdp.ntree \
+		-s core_rdp.fasta
+endif
 
 # Note a manpage was generated using:
 #  help2man -N ./parsinsert --version-string=1.04 > debian/parsinsert.1

debian/upstream/metadata

@@ -5,3 +5,4 @@ Registry:
   Entry: NA
 - Name: bio.tools
   Entry: NA
+Archive: SourceForge

debian/watch

 version=3
-http://sf.net/parsinsert/ParsInsert\.([\d\.]+)\.tgz
+https://sf.net/parsinsert/ParsInsert\.([\d\.]+)\.tgz