debian/changelog

@@ -7,7 +7,8 @@ pbbam (0.18.0+dfsg-1) UNRELEASED; urgency=medium
   * Upstream switched from cmake to meson
   * debhelper 11
   * Point Vcs fields to salsa.debian.org
-  * Standards-Version: 4.2.0
+  * Standards-Version: 4.2.1
+  * Use d-shlibs
 
   [ Fabian Kloetzl ]
   * fix dependency check for meson

debian/control

 Source: pbbam
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Afif Elghraoui <afif@debian.org>
-Section: libs
+Section: science
 Priority: optional
 Build-Depends: debhelper (>= 11~),
                dh-exec,
+               d-shlibs,
                meson,
                pkg-config,
                python,
@@ -17,14 +18,13 @@ Build-Depends: debhelper (>= 11~),
                libgtest-dev,
                python-cram,
                samtools
-Standards-Version: 4.2.0
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/pbbam
 Vcs-Git: https://salsa.debian.org/med-team/pbbam.git
 Homepage: http://pbbam.readthedocs.org/en/latest/index.html
 
 Package: pbbamtools
 Architecture: any
-Section: science
 Depends: ${shlibs:Depends},
          ${misc:Depends},
          libpbbam (= ${binary:Version})
@@ -42,9 +42,10 @@ Description: processing Pacific Biosciences binary alignment/map files
  This package provides command-line utilities for working with PacBio BAM
  files.
 
-Package: libpbbam
+Package: libpbbam0.18.0
 Architecture: any
 Multi-Arch: same
+Section: libs
 Depends: ${shlibs:Depends},
          ${misc:Depends}
 Pre-Depends: ${misc:Pre-Depends}
@@ -62,7 +63,7 @@ Description: Pacific Biosciences binary alignment/map (BAM) library
 Package: libpbbam-dev
 Architecture: any
 Section: libdevel
-Depends: libpbbam (= ${binary:Version}),
+Depends: libpbbam0.18.0 (= ${binary:Version}),
          libhts-dev,
          libssl-dev,
          ${misc:Depends}

debian/libpbbam-dev.install

-include/*	usr/include

debian/libpbbam.install

-#!/usr/bin/dh-exec
-*/lib/*	usr/lib/${DEB_HOST_MULTIARCH}

debian/libpbbam.lintian-overrides

-# Upstream has not yet stabilized the API.
-# This library is so far only used by a closely-related set of programs.
-shlib-without-versioned-soname usr/lib/x86_64-linux-gnu/libpbbam.so libpbbam.so
-# Because of the lack of versioned soname, the library itself contains
-# the libpbbam.so file, so there's no need for a symlink.
-dev-pkg-without-shlib-symlink usr/lib/x86_64-linux-gnu/libpbbam.so usr/lib/x86_64-linux-gnu/libpbbam.so

debian/rules

@@ -25,8 +25,6 @@ generated_data_dir = $(CURDIR)/gendata
 override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))
 	mkdir -p $(generated_data_dir)
 	python tests/scripts/generate_data.py $(CURDIR)/tests/data $(generated_data_dir)
-	# remove dfsg extension from test cases
-	sed -i -e 's/+dfsg//g' -e 's?\(/build/$(DEB_SOURCE)-[0-9.]\+\)/?\1+dfsg/?' tests/src/cram/*
 	# Fix broken PATH
 	synthetic_movie_all_path=`find $$PWD -name synthetic_movie_all.subreadset.xml` ; \
 	sed -i -e "s?.GENERATEDDATADIR/synthetic_movie_all.subreadset.xml?$${synthetic_movie_all_path}?" tests/src/cram/pbbamify*
@@ -53,5 +51,17 @@ override_dh_auto_clean:
 	-e 's|@PacBioBAM_TestsDir@|$(CURDIR)/tests|g' \
 	-e 's|@PacBioBAM_VERSION@|$(DEB_VERSION_UPSTREAM)|g' \
 	-e 's|@GeneratedTestDataDir@|$(generated_data_dir)|g' \
+	-e 's|+dfsg||g' -e 's|\(/build/$(DEB_SOURCE)-[0-9.]\+\)/|\1+dfsg/|' \
 	$< > $@
 
+override_dh_install:
+	dh_install
+	d-shlibmove --commit \
+		    --multiarch \
+		    --devunversioned \
+		    --exclude-la \
+		    --exclude-a \
+		    --override s/libhts2-dev/libhts-dev/ \
+		    --movedev debian/tmp/usr/include/* usr/include \
+		    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \
+		    debian/tmp/usr/lib/*/*.so