debian/changelog

+pbbam (0.19.0+dfsg-4) unstable; urgency=medium
+
+  * Team upload.
+
+  [ Steve Langasek ]
+  * Fix autopkgtest on different architectures
+
+  [ Andreas Tille ]
+  * Cleanup d/rules
+  * No "Provides: libpbbam" due to ABI incompatibility
+
+ -- Andreas Tille <tille@debian.org>  Wed, 06 Feb 2019 09:16:06 +0100
+
 pbbam (0.19.0+dfsg-3) unstable; urgency=medium
 
   * Team upload.

debian/control

@@ -50,7 +50,6 @@ Depends: ${shlibs:Depends},
          ${misc:Depends}
 Pre-Depends: ${misc:Pre-Depends}
 Breaks: libpbbam (<< ${source:Version})
-Provides: libpbbam
 Replaces: libpbbam
 Description: Pacific Biosciences binary alignment/map (BAM) library
  The BAM format is a binary, compressed, record-oriented container format

debian/rules

@@ -12,20 +12,9 @@ generated_data_dir = $(CURDIR)/gendata
 %:
 	  dh $@ --buildsystem=meson
 
-#override_dh_auto_configure:
-#	dh_auto_configure -- \
-#	-DPacBioBAM_build_shared=ON \
-#	-DPacBioBAM_build_tests=OFF \
-#	-DCMAKE_LIBRARY_PATH=$(DEB_HOST_MULTIARCH) \
-#	-DCMAKE_SKIP_RPATH=ON \
-#	-DHTSLIB_INCLUDE_DIRS=/usr/include \
-#	-DHTSLIB_LIBRARIES="-lssl -lcrypto -lhts" \
-#	-DCMAKE_SHARED_LINKER_FLAGS="$(LDFLAGS)"
-##	-DPacBioBAM_wrap_python=ON \
-##	-DPacBioBAM_wrap_r=ON
-
 override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	dh_auto_configure -O--buildsystem=meson
 	mkdir -p $(generated_data_dir)
 	python tests/scripts/generate_data.py $(CURDIR)/tests/data $(generated_data_dir)
 	# Fix broken PATH

debian/tests/control

 Test-Command: debian/rules override_dh_auto_test
 Depends:
-	make,
-	python,
+	@builddeps@,
 	pbbamtools,
-	python-cram,
-	samtools
-Restrictions:
-	rw-build-tree,
-	allow-stderr,
-	build-needed
+Restrictions: rw-build-tree, allow-stderr