debian/changelog

@@ -12,6 +12,8 @@ pbh5tools (0.8.0+git20181212.9fa8fc4+dfsg-2) UNRELEASED; urgency=medium
     debian/patches/series.
   * Use 2to3 to convert from Python2 to Python3
     Closes: #937256
+  TODO: Not compatible with recent version of pbcore whic his lacking
+        CmpH5Reader and rangeQueries
 
  -- Andreas Tille <tille@debian.org>  Sat, 07 Dec 2019 09:23:30 +0100
 

debian/patches/2to3.patch

@@ -5,7 +5,7 @@ Last-Update: Sat, 07 Dec 2019 09:23:30 +0100
 
 --- a/Makefile
 +++ b/Makefile
-@@ -4,17 +4,17 @@ SHELL = /bin/bash -e
+@@ -4,26 +4,26 @@ SHELL = /bin/bash -e
  all: build install
  
  build:
@@ -27,7 +27,19 @@ Last-Update: Sat, 07 Dec 2019 09:23:30 +0100
 +	python3 setup.py develop
  
  test: examples
- 	find tests -name "*.py" | xargs nosetests -v
+-	find tests -name "*.py" | xargs nosetests -v
+-	-find tests/cram -name "*.t" | xargs cram -v
++	find tests -name "*.py" | xargs nosetests3 -v
++	-find tests/cram -name "*.t" | xargs cram3 -v
+ doc:
+ 	sphinx-apidoc -T -f -o doc src/ && cd doc && make html
+ 
+ examples:
+-	-cram -v doc/examples.t
++	-cram3 -v doc/examples.t
+ 	sed 's/^  /    /' doc/examples.t > doc/examples.md
+ 
+ example-rendered: examples
 --- a/bin/bash5tools.py
 +++ b/bin/bash5tools.py
 @@ -1,4 +1,4 @@

debian/rules

@@ -24,6 +24,7 @@ override_dh_install:
 
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	PATH=$(PATH):$(CURDIR)/`find build -name cmph5tools.py | head -n1 | xargs dirname` \
 	PYBUILD_SYSTEM=custom \
 	PYBUILD_TEST_ARGS="PATH=$(CURDIR)/build/scripts-2.7:$$PATH $(MAKE) test" \
 	  dh_auto_test