debian/changelog

 pbseqlib (5.3.3+dfsg-1) UNRELEASED; urgency=medium
 
+  [ Helmut Grohne ]
+  * Covnert libpbseq-dev to Architecture: any. (Closes: #940327)
+
   [ Andreas Tille ]
   * Add myself to Uploaders to have at least one human uploader after
     Afif removed himself.
   * New upstream version
   * debhelper-compat 12
-  * Standards-Version: 4.4.0
   * Add new Build-Depends needed for testing
-
-  [ Helmut Grohne ]
-  * Covnert libpbseq-dev to Architecture: any. (Closes: #940327)
+  * Standards-Version: 4.4.1
+  * debian/copyright: use spaces rather than tabs to start continuation
+    lines.
 
  -- Andreas Tille <tille@debian.org>  Mon, 05 Aug 2019 16:53:23 +0200
 

debian/control

@@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 12),
                libpbbam-dev (>= 0.18.0+dfsg-1~),
                libhts-dev,
                libgtest-dev <!nocheck>
-Standards-Version: 4.4.0
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib
 Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp

debian/patches/meson.patch

+Author: Andreas Tille <tille@debian.org>
+Last-Update: Fri, 13 Dec 2019 22:17:15 +0100
+Description: There is no point to check for gtest since its installed via Build-Depends
+
+--- a/unittest/meson.build
++++ b/unittest/meson.build
+@@ -11,7 +11,7 @@ subdir('pbdata')
+ # Sources #
+ ###########
+ 
+-libblasr_gtest_dep = dependency('gtest_main', fallback : ['gtest', 'gtest_main_dep'])
++libblasr_gtest_dep = dependency('gtest', main: true)
+ 
+ libblasr_unittest = executable(
+   'libblasr_unittest', [

debian/patches/series

 hdf5-1.10.1-support.patch
 hdf5-1.10.0-support.patch
+meson.patch

debian/rules

@@ -8,7 +8,7 @@ export HDF5_LIB = /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
 export GTEST_INC = /usr/include
 export GTEST_SRCDIR = /usr/src/gtest
 
-export DEB_CFLAGS_MAINT_APPEND=-O3
+export DEB_CFLAGS_MAINT_APPEND=-O3 -I$(HDF5_INC)
 export DEB_CXXFLAGS_MAINT_APPEND=-O3
 
 export LDLIBS += -lpbbam
@@ -16,7 +16,7 @@ export LDLIBS += -lpbbam
 # Needed for patch hdf5-1.10.1-support.patch
 HDF5_VERSION := $(shell grep 'HDF5 Version' $(HDF5_LIB)/libhdf5.settings | awk '{print $$3}')
 ifeq (yes,$(shell dpkg --compare-versions $(HDF5_VERSION) '>=' 1.10.1 && echo yes))
-export DEB_CPPFLAGS_MAINT_APPEND=-DHAVE_HDF5_1_10_1
+export DEB_CPPFLAGS_MAINT_APPEND+=-DHAVE_HDF5_1_10_1 $(DEB_CFLAGS_MAINT_APPEND)
 endif
 
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all
@@ -24,9 +24,6 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 %:
 	dh $@
 
-override_dh_auto_build:
-	dh_auto_build -- PREFIX_INC=..
-
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 # Ignore the return code because some tests