debian/changelog

+pbsuite (15.8.24+dfsg-3) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.0
+
+ -- Andreas Tille <tille@debian.org>  Fri, 17 Aug 2018 16:17:04 +0200
+
 pbsuite (15.8.24+dfsg-2) unstable; urgency=medium
 
   * Update pbsuite for compatibility with blasr 5 (Closes: #844034)

debian/compat

-9
+11

debian/control

 Source: pbsuite
+Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <afif@debian.org>
 Section: science
 Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
-Uploaders:
-	Afif Elghraoui <afif@debian.org>
-Build-Depends:
-	debhelper (>= 9),
+Build-Depends: debhelper (>= 11~),
                dh-python,
-	python-all,
-Standards-Version: 3.9.8
+               python-all
+Standards-Version: 4.2.0
+Vcs-Browser: https://salsa.debian.org/med-team/pbsuite
+Vcs-Git: https://salsa.debian.org/med-team/pbsuite.git
 Homepage: http://sourceforge.net/projects/pb-jelly
-Vcs-Git: https://anonscm.debian.org/git/debian-med/pbsuite.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbsuite.git
 
 Package: pbsuite
-Section: metapackages
 Architecture: all
-Depends:
-	${misc:Depends},
+Section: metapackages
+Depends: ${misc:Depends},
          pbjelly,
-	pbhoney,
+         pbhoney
 Description: software for Pacific Biosciences sequencing data
  The PBSuite contains two projects created for analysis of
  Pacific Biosciences long-read sequencing data.
@@ -27,12 +24,11 @@ Description: software for Pacific Biosciences sequencing data
   * PBHoney - structural variation discovery
 
 Package: python-pbsuite-utils
-Section: python
 Architecture: all
-Depends:
-	${misc:Depends},
+Section: python
+Depends: ${misc:Depends},
          ${python:Depends},
-	python-pysam (>= 0.8.0),
+         python-pysam (>= 0.8.0)
 Description: software for Pacific Biosciences sequencing data -- Python utilities
  The PBSuite currently contains two projects created and maintained
  by Adam English for analysis of Pacific Biosciences long-read
@@ -44,12 +40,11 @@ Description: software for Pacific Biosciences sequencing data -- Python utilitie
 
 Package: pbjelly
 Architecture: all
-Depends:
-	${misc:Depends},
+Depends: ${misc:Depends},
          ${python:Depends},
          python-pbsuite-utils (= ${source:Version}),
          python-networkx,
-	blasr (>= 5.3),
+         blasr (>= 5.3)
 Description: genome assembly upgrading tool
  PBJelly is a highly automated pipeline that aligns long sequencing
  reads (such as PacBio RS reads or long 454 reads in fasta format)
@@ -60,20 +55,18 @@ Description: genome assembly upgrading tool
 
 Package: pbhoney
 Architecture: all
-Depends:
-	${misc:Depends},
+Depends: ${misc:Depends},
          ${python:Depends},
          python-pbsuite-utils (= ${source:Version}),
          python-pbbanana (= ${source:Version}),
          python-pysam (>= 0.8.0),
          python-networkx,
-	python-h5py (>= 2.0.1),
+         python-h5py,
          python-numpy,
          python-intervaltree-bio,
          blasr (>= 5.3),
-	samtools,
-Recommends:
-	pbdagcon,
+         samtools
+Recommends: pbdagcon
 Description: genomic structural variation discovery
  PBHoney is an implementation of two variant-identification
  approaches designed to exploit the high mappability of long reads
@@ -84,15 +77,14 @@ Description: genomic structural variation discovery
  PBHoney is part of the PBSuite.
 
 Package: python-pbbanana
+Architecture: all
 Section: python
-Depends:
-	${misc:Depends},
+Depends: ${misc:Depends},
          ${python:Depends},
          python-pbsuite-utils (= ${source:Version}),
          python-networkx,
          pbjelly (= ${source:Version}),
-	blasr,
-Architecture: all
+         blasr
 Description: additional utilities for the pbsuite
  PBBanana contains some assembly and consensus utilities
  for the PBSuite.