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Commits on Source (8)
pftools (3+dfsg-3) UNRELEASED; urgency=medium
pftools (3+dfsg-3) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upsdtream/metadata:
- Pointed out that there are no references in registries
- yamllint cleanliness
-- Steffen Moeller <moeller@debian.org> Sat, 16 Sep 2017 16:41:54 +0200
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* d/rules:
- Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- Do not parse d/changelog
-- Andreas Tille <tille@debian.org> Fri, 07 Sep 2018 13:05:57 +0200
pftools (3+dfsg-2) unstable; urgency=medium
......
Source: pftools
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Build-Depends: debhelper (>= 10),
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
gfortran,
autoconf-archive
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pftools.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/pftools.git
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/pftools
Vcs-Git: https://salsa.debian.org/med-team/pftools.git
Homepage: http://web.expasy.org/pftools/
Package: pftools
Architecture: any-amd64
Depends: ${shlibs:Depends}, ${misc:Depends}
Depends: ${shlibs:Depends},
${misc:Depends}
Description: build and search protein and DNA generalized profiles
The pftools package contains all the software necessary to build protein
and DNA generalized profiles and use them to scan and align sequences,
......
......@@ -2,7 +2,7 @@ Author: Andreas Tille <tille@debian.org>
Last-Update: Tue, 21 Mar 2017 22:14:51 +0100
Description: The test output seems to be created with pftools 2.3 and the
output format has changed in version 3. This patch adapts to slight
formating changes (as well as the dropped PATH from test script).
formatting changes (as well as the dropped PATH from test script).
.
Note: There are more relevant differences than just spacing which are
not fixed in this patch.
......
......@@ -2,7 +2,7 @@
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
include /usr/share/dpkg/default.mk
%:
dh $@
......@@ -10,21 +10,22 @@ DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
override_dh_auto_install:
dh_auto_install
# Avoid name spacing conflict with htop and consequently also rename gtop
mv debian/$(DEBPKGNAME)/usr/bin/gtop debian/$(DEBPKGNAME)/usr/bin/pfgtop
mv debian/$(DEBPKGNAME)/usr/bin/htop debian/$(DEBPKGNAME)/usr/bin/pfhtop
mv debian/$(DEB_SOURCE)/usr/bin/gtop debian/$(DEB_SOURCE)/usr/bin/pfgtop
mv debian/$(DEB_SOURCE)/usr/bin/htop debian/$(DEB_SOURCE)/usr/bin/pfhtop
override_dh_installman:
dh_installman
mv debian/$(DEBPKGNAME)/usr/share/man/man1/gtop.1 debian/$(DEBPKGNAME)/usr/share/man/man1/pfgtop.1
mv debian/$(DEBPKGNAME)/usr/share/man/man1/htop.1 debian/$(DEBPKGNAME)/usr/share/man/man1/pfhtop.1
mv debian/$(DEB_SOURCE)/usr/share/man/man1/gtop.1 debian/$(DEB_SOURCE)/usr/share/man/man1/pfgtop.1
mv debian/$(DEB_SOURCE)/usr/share/man/man1/htop.1 debian/$(DEB_SOURCE)/usr/share/man/man1/pfhtop.1
override_dh_installexamples:
dh_installexamples
sed -i \
-e 's:^\([gh]top\) :pf\1 :' \
debian/$(DEBPKGNAME)/usr/share/doc/$(DEBPKGNAME)/examples/test.sh
debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/examples/test.sh
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
dh_auto_test
export PATH=$(CURDIR)/src/Fortran/:$(PATH) ; \
echo $${PATH} ; \
......@@ -34,3 +35,4 @@ override_dh_auto_test:
-e '/^DT */d' > test.build ; \
grep -v '^DT *' test.out > test.compare ; \
diff -u test.compare test.build || true
endif